Gene detail

Detail information of GWHGAAZE016917

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011090448.1	PREDICTED: ribonucleoside-diphosphate reductase large subunit isoform X2 [Sesamum indicum]
Swissprot	tr\|Q9SJ20\|RIR1_ARATH	Ribonucleoside-diphosphate reductase large subunit {ECO:0000303\|PubMed:10542051}
trEMBL	tr\|D7SWA0\|D7SWA0_VITVI	Ribonucleoside-diphosphate reductase {ECO:0000256\|RuleBase:RU003410}
TAIR10	AT2G21790.1	ribonucleotide reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	85917922	85925542	+
GWHAAZE00000004	mRNA	85917922	85925542	+
GWHAAZE00000004	exon	85917922	85918149	+
GWHAAZE00000004	exon	85918721	85918782	+
GWHAAZE00000004	exon	85918887	85918978	+
GWHAAZE00000004	exon	85919756	85920057	+
GWHAAZE00000004	exon	85920788	85921028	+
GWHAAZE00000004	exon	85921116	85921192	+
GWHAAZE00000004	exon	85921589	85921759	+
GWHAAZE00000004	exon	85921885	85921977	+
GWHAAZE00000004	exon	85922154	85922303	+
GWHAAZE00000004	exon	85922401	85922487	+
GWHAAZE00000004	exon	85923094	85923258	+
GWHAAZE00000004	exon	85923353	85923472	+
GWHAAZE00000004	exon	85924106	85924308	+
GWHAAZE00000004	exon	85924397	85924546	+
GWHAAZE00000004	exon	85924628	85924775	+
GWHAAZE00000004	exon	85925280	85925363	+
GWHAAZE00000004	exon	85925444	85925542	+
GWHAAZE00000004	CDS	85917922	85918149	+
GWHAAZE00000004	CDS	85918721	85918782	+
GWHAAZE00000004	CDS	85918887	85918978	+
GWHAAZE00000004	CDS	85919756	85920057	+
GWHAAZE00000004	CDS	85920788	85921028	+
GWHAAZE00000004	CDS	85921116	85921192	+
GWHAAZE00000004	CDS	85921589	85921759	+
GWHAAZE00000004	CDS	85921885	85921977	+
GWHAAZE00000004	CDS	85922154	85922303	+
GWHAAZE00000004	CDS	85922401	85922487	+
GWHAAZE00000004	CDS	85923094	85923258	+
GWHAAZE00000004	CDS	85923353	85923472	+
GWHAAZE00000004	CDS	85924106	85924308	+
GWHAAZE00000004	CDS	85924397	85924546	+
GWHAAZE00000004	CDS	85924628	85924775	+
GWHAAZE00000004	CDS	85925280	85925363	+
GWHAAZE00000004	CDS	85925444	85925542	+

Transcript Sequence
>GWHTAAZE016937 ATGTATGTGGTGAAGAGAGATGGGAGACAAGAGACAGTTCACTTTGATAAGATAACTGCTCGTTTGAAGAAATTGAGTTATGGGCTTAGTGTTGACCACTGTGATCCGGTGCTGGTTGCACAGAAGGTGTGTGCTGGTGTCTATAAGGGCGTTACTACCAGCCAGCTTGATGAATTGGCTGCTGAAACTGCGGCTGCTATGACTGCCAATCATCCTGATTATGCCTCTTTGGCTGCAAGGATTGTTGTTTCAAATCTGCATAAGAACACGAAGAAATCATTTTCAGAGACGATCAAAGACATGTACAACCATTTCAACCAGAGATCTGGATTGAAGGCACCTCTGATTGCAGATGATGTTTATGCGATAATCATGAAGGCATCCAAAGTTAACATATCTAATGAACTTTTTGTGCATCAGAATGCTGCTCTTTTAGACAGTGAGATAATCTATGATCGGGATTTTGACTATGACTACTTTGGTTTCAAAACACTTGAGAGATCCTACCTCTTAAAGGTCCAAGGGAAGGTGGTTGAAAGGCCACAGCACATGTTGATGAGGGTTGCTGTTGGGATTCACAAGGATGATATTGATTCTGTCATCAAGACATACCATTTAATGTCTCAGCGATGGTTCACTCATGCATCTCCAACCCTCTTCAATGCTGGAACACCAAGGCCCCAATTAAGTAGCTGCTTCCTGATTTGCATGAAAGAGGATAGTATTGAAGGCATATATGATACTTTGAAAGAGTGTGCTGTAATCAGCAAATCAGCTGGAGGTATTGGTGTCTCTATTCACAACATTCGTGCTACTGGAAGTTACATTCGTGGAACAAATGGGACATCCAATGGCATTGTTCCAATGTTACGTGTATTCAATGATACTGCCCGTTATGTTGATCAAGGGGGTGGCAAAAGGAAGGGTGCTTTTGCTGTCTACCTGGAGCCATGGCATGCTGATATCTTTGATTTTCTTGATTTAAGGAAGAACCATGGAAAGGAAGAAAACCGTGCTCGGGATCTATTTTACGCTCTTTGGGTGCCTGATCTATTTATGGAAAGAGTCCAAAGTAATGGGACGTGGTCGTTATTTTGTCCTAGTGAGGCTCCGGGCTTGGCTGATTGTTGGGGTGAGGAATTTGAAAAATTGTACACTCAATATGAAAGAGAGGGCAAGGCAAAAAAGGTTGTGAAGGCACAAGATCTTTGGTTTGAAGTATTGAAGTCACAGATAGAAACTGGGACCCCTTATATGCTATTTAAGGATACATGCAATAGGAAAAGCAACCAGCAGAATCTTGGAACCATTAAGTCTTCAAACTTGTGCACTGAGATCATTGAGTACACAAGTCCAACAGAAACTGCTGTATGCAATCTAGCATCAATTGCTCTACCACGATATGTTAGAGAGAAGGGGGTTCCAATGGAATCACAACCATCTAAGCTTGCAGGCAGCAGAGGCTCCAAGAATAGATATTTTGATTTTGACAAACTAGCAGAGGTTACTACCATAGTCACTCTAAATCTTAATAAAATAATTGATGTTAACTACTACCCGGTTGAAACTGCGGAAAGGTCAAATTTACGACACCGCCCCATTGGTATTGGGGTACAGGGTCTTGCGGATACTTTCATGTTGCTGGGAATGGCATTTGACTCCCCTGAAGCTCAACAGCTGAACAAAGACATATTTGAGACCATATACTATTATGCTCTGAAAGCATCTTGTGAGTTAGCTGTGAAAGAAGGCCCCTATGAGACATATGATGGATGTCCTGTGAGCAAGGGGATTCTTCAACCAGACATGTGGGGAGTTAAAACTTCGGACCGGTGGGACTGGGATGCTCTTCGAGCAATGATAGCAAATAATGGAGTGAGGAATTCACTTCTTGTAGCTCCCATGCCTACTGCTTCAACCAGCCAGATTCTTGGAAATAATGAGTGCTTTGAGCCATATACCTCTAATATCTACAGTCGCCGTGTTCTAAGTGGTGAATTTGTTGTGGTGAACAAACATCTCCTTCACGACTTAACGGAGATGGGAATCTGGTCCCCCAATGTCAAGAACAGGATTATTTATGAAAATGGCTCTGTTCAGAAAATCCCAGAAATTCCTCAAGATTTGAGAGATATTTACAAAACTGTTTGGGAAATCAAGCAAAGGACGTTGGTTGATATGGCGGCTGATCGTGGGTGCTATATAGACCAGAGTCAGAGCCTGAATATACATATGGATCAACCCAACTTTGGAAAGCTTACTTCTCTGCACTTCCATGCTTGGTCCAAGGGTTTGAAGACGGGGATGTATTATTTACGTTCACGAGCTGCAGCAGATGCTATCAAGTTCACTGTTGATACTAATATGCTGAAGGAGAAAAGCAAGACAGTCGGTGAGGATGATAATACAAAATTGGCACAGATGGTATGTTCATTAACAAACCGTGATGAGTGCATGGCTTGTGGAAGTTAG

Network for GWHGAAZE016917

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03477.17	ATP-cone	1	89	7.70E-16
PF00317.22	Ribonuc_red_lgN	156	226	7.80E-25
PF02867.16	Ribonuc_red_lgC	230	771	2.10E-195

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10807	RRM1	Metabolic pathways	map01100
		Purine metabolism	map00230
		Pyrimidine metabolism	map00240
		Glutathione metabolism	map00480
		Drug metabolism - other enzymes	map00983

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0055114	biological_process	oxidation-reduction process
GO:0004748	molecular_function	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.818
	SRR3591706	second leaf	14.020
	SRR3591707	mature leaf	8.575
	SRR3591708	Shoot apex	77.340
	SRR3591709	Stem	17.616
	SRR3591710	White floral bud	7.473
	SRR3591711	White flower	11.021
	SRR3591712	Green floral bud	14.107
	SRR3591713	Yellow flower	7.601
SRP173429	SRR8316895	Juvenile bud stage	23.708
	SRR8316896	Juvenile bud stage	29.121
	SRR8316897	Juvenile bud stage	11.903
	SRR8316894	Third green stage	8.617
	SRR8316900	Third green stage	16.624
	SRR8316901	Third green stage	12.305
	SRR8316898	Complete white stage	2.894
	SRR8316899	Complete white stage	14.529
	SRR8316903	Complete white stage	5.342
	SRR8316902	Silver flowering stage	2.626
	SRR8316904	Silver flowering stage	3.629
	SRR8316905	Silver flowering stage	1.281
	SRR8316906	Gold flowering stage	7.656
	SRR8316907	Gold flowering stage	6.950
	SRR8316908	Gold flowering stage	9.024
SRP132670	SRR6706286	Control	12.011
	SRR6706287	Light intensity 50%	14.818
	SRR6706288	Light intensity 20%	19.687
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.520
	CNS0095593	Slightly white alabastrum(diploid) 2	15.022
	CNS0095594	Slightly white alabastrum(diploid) 3	11.956
	CNS0095595	Whole white alabastrum(diploid) 2	11.776
	CNS0095596	Whole white alabastrum(diploid) 3	8.899
	CNS0095597	Whole white alabastrum(diploid) 4	7.564
	CNS0095598	Silvery flower (diploied) 1	14.147
	CNS0095599	Silvery flower (diploied) 2	18.498
	CNS0095600	Silvery flower (diploied) 3	15.072
	CNS0095601	Golden flower (diploid) 1	12.893
	CNS0095602	Golden flower (diploid) 2	13.029
	CNS0095603	Golden flower (diploid) 3	11.601
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.825
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.948
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.633
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.831
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.373
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.691
	CNS0095610	Silvery flower (tetraploid) 1	11.319
	CNS0095611	Silvery flower (tetraploid) 2	12.756
	CNS0095612	Silvery flower (tetraploid) 3	10.818
	CNS0095613	Golden flower (tetraploid) 1	4.361
	CNS0095614	Golden flower (tetraploid) 2	6.900
	CNS0095615	Golden flower (tetraploid) 3	2.605
CRA001975	CRR073297	Stem 1	36.448
	CRR073298	Stem 2	30.070
	CRR073299	Stem 3	37.560
	CRR073300	Leaf 1	13.892
	CRR073301	Leaf 2	11.695
	CRR073302	Leaf 3	9.678
	CRR073303	Juvenile bud 1	13.512
	CRR073304	Juvenile bud 2	7.753
	CRR073305	Juvenile bud 3	15.327
	CRR073306	Third green 1	2.855
	CRR073307	Third green 2	2.378
	CRR073308	Third green 3	3.984
	CRR073309	Second white 1	3.665
	CRR073310	Second white 2	4.894
	CRR073311	Second white 3	2.775
	CRR073312	Silver flowering 1	2.533
	CRR073313	Silver flowering 2	3.015
	CRR073314	Silver flowering 3	2.305
	CRR073315	Gold flowering 1	9.534
	CRR073316	Gold flowering 2	17.447
	CRR073317	Gold flowering 3	10.364
	CRR073318	Tawny withering 1	28.891
	CRR073319	Tawny withering 2	28.240
	CRR073320	Tawny withering 3	35.213