Detail information of GWHGAAZE016912


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010088726.15.80144E-86hypothetical protein L484_016512 [Morus notabilis]
Swissprottr|F4KFC7|MD26C_ARATH1E-62Probable mediator of RNA polymerase II transcription subunit 26c
trEMBLtr|W9QGB8|W9QGB8_9ROSA2E-86Uncharacterized protein {ECO:0000313|EMBL:EXB36907.1}
TAIR10AT5G09850.13E-44Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8574756585749556-
GWHAAZE00000004mRNA8574756585749556-
GWHAAZE00000004exon8574915285749556-
GWHAAZE00000004exon8574886185748929-
GWHAAZE00000004exon8574864885748759-
GWHAAZE00000004exon8574822185748279-
GWHAAZE00000004exon8574806185748114-
GWHAAZE00000004exon8574756585747681-
GWHAAZE00000004CDS8574915285749556-
GWHAAZE00000004CDS8574886185748929-
GWHAAZE00000004CDS8574864885748759-
GWHAAZE00000004CDS8574822185748279-
GWHAAZE00000004CDS8574806185748114-
GWHAAZE00000004CDS8574756585747681-
Transcript Sequence

Network for GWHGAAZE016912

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08711.12Med261431858.30E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyIWS1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005634cellular_componentnucleus

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.970
SRR3591706second leaf14.602
SRR3591707mature leaf29.007
SRR3591708Shoot apex12.197
SRR3591709Stem32.315
SRR3591710White floral bud38.310
SRR3591711White flower44.721
SRR3591712Green floral bud29.235
SRR3591713Yellow flower41.030
SRP173429 SRR8316895Juvenile bud stage 24.144
SRR8316896Juvenile bud stage 36.676
SRR8316897Juvenile bud stage 19.159
SRR8316894Third green stage 18.635
SRR8316900Third green stage 44.656
SRR8316901Third green stage 40.354
SRR8316898Complete white stage 21.356
SRR8316899Complete white stage 63.195
SRR8316903Complete white stage 36.824
SRR8316902Silver flowering stage21.447
SRR8316904Silver flowering stage31.333
SRR8316905Silver flowering stage16.236
SRR8316906Gold flowering stage 51.037
SRR8316907Gold flowering stage 40.575
SRR8316908Gold flowering stage 54.646
SRP132670SRR6706286Control37.165
SRR6706287Light intensity 50%37.148
SRR6706288Light intensity 20%37.742
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.002
CNS0095593Slightly white alabastrum(diploid) 234.109
CNS0095594Slightly white alabastrum(diploid) 326.114
CNS0095595Whole white alabastrum(diploid) 226.664
CNS0095596Whole white alabastrum(diploid) 326.047
CNS0095597Whole white alabastrum(diploid) 426.785
CNS0095598Silvery flower (diploied) 144.761
CNS0095599Silvery flower (diploied) 236.234
CNS0095600Silvery flower (diploied) 350.467
CNS0095601Golden flower (diploid) 134.955
CNS0095602Golden flower (diploid) 254.603
CNS0095603Golden flower (diploid) 347.973
CNS0095604Slightly white alabastrum(tetraploid) 131.890
CNS0095605Slightly white alabastrum(tetraploid) 227.223
CNS0095606Slightly white alabastrum(tetraploid) 335.120
CNS0095607Whole white alabastrum(tetraploid) 130.230
CNS0095608Whole white alabastrum(tetraploid) 221.844
CNS0095609Whole white alabastrum(tetraploid) 326.547
CNS0095610Silvery flower (tetraploid) 141.625
CNS0095611Silvery flower (tetraploid) 247.145
CNS0095612Silvery flower (tetraploid) 362.308
CNS0095613Golden flower (tetraploid) 131.019
CNS0095614Golden flower (tetraploid) 240.893
CNS0095615Golden flower (tetraploid) 331.980
CRA001975CRR073297Stem 149.783
CRR073298Stem 245.271
CRR073299Stem 333.374
CRR073300Leaf 160.200
CRR073301Leaf 253.713
CRR073302Leaf 340.106
CRR073303Juvenile bud 149.238
CRR073304Juvenile bud 231.940
CRR073305Juvenile bud 342.547
CRR073306Third green 130.246
CRR073307Third green 231.779
CRR073308Third green 329.617
CRR073309Second white 129.283
CRR073310Second white 233.358
CRR073311Second white 330.356
CRR073312Silver flowering 125.750
CRR073313Silver flowering 219.315
CRR073314Silver flowering 318.846
CRR073315Gold flowering 118.940
CRR073316Gold flowering 218.644
CRR073317Gold flowering 312.449
CRR073318Tawny withering 167.446
CRR073319Tawny withering 264.652
CRR073320Tawny withering 354.846