Detail information of GWHGAAZE016890


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP04747.11.51101E-64unnamed protein product [Coffea canephora]
Swissprottr|Q8LGD5|MKS1_ARATH4E-29Protein MKS1
trEMBLtr|A0A068U911|A0A068U911_COFCA6E-65Coffea canephora DH200=94 genomic scaffold, scaffold_13 {ECO:0000313|EMBL:CDP04747.1}
TAIR10AT3G18690.12E-19MAP kinase substrate 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8504012785040867+
GWHAAZE00000004mRNA8504012785040867+
GWHAAZE00000004exon8504012785040867+
GWHAAZE00000004CDS8504012785040867+
Transcript Sequence

Network for GWHGAAZE016890

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05678.15VQ67925.00E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20725MKS1 MAPK signaling pathway - plant map04016

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf9.206
SRR3591706second leaf5.232
SRR3591707mature leaf9.639
SRR3591708Shoot apex11.961
SRR3591709Stem26.050
SRR3591710White floral bud19.315
SRR3591711White flower21.617
SRR3591712Green floral bud14.825
SRR3591713Yellow flower9.791
SRP173429 SRR8316895Juvenile bud stage 9.195
SRR8316896Juvenile bud stage 5.240
SRR8316897Juvenile bud stage 3.789
SRR8316894Third green stage 8.843
SRR8316900Third green stage 17.278
SRR8316901Third green stage 21.105
SRR8316898Complete white stage 6.782
SRR8316899Complete white stage 51.221
SRR8316903Complete white stage 9.178
SRR8316902Silver flowering stage7.498
SRR8316904Silver flowering stage6.107
SRR8316905Silver flowering stage6.532
SRR8316906Gold flowering stage 16.750
SRR8316907Gold flowering stage 15.862
SRR8316908Gold flowering stage 13.880
SRP132670SRR6706286Control21.130
SRR6706287Light intensity 50%22.461
SRR6706288Light intensity 20%20.949
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.291
CNS0095593Slightly white alabastrum(diploid) 212.174
CNS0095594Slightly white alabastrum(diploid) 310.610
CNS0095595Whole white alabastrum(diploid) 28.301
CNS0095596Whole white alabastrum(diploid) 311.424
CNS0095597Whole white alabastrum(diploid) 412.812
CNS0095598Silvery flower (diploied) 127.553
CNS0095599Silvery flower (diploied) 225.330
CNS0095600Silvery flower (diploied) 320.943
CNS0095601Golden flower (diploid) 127.357
CNS0095602Golden flower (diploid) 223.692
CNS0095603Golden flower (diploid) 322.044
CNS0095604Slightly white alabastrum(tetraploid) 17.142
CNS0095605Slightly white alabastrum(tetraploid) 26.028
CNS0095606Slightly white alabastrum(tetraploid) 314.893
CNS0095607Whole white alabastrum(tetraploid) 18.208
CNS0095608Whole white alabastrum(tetraploid) 27.818
CNS0095609Whole white alabastrum(tetraploid) 311.330
CNS0095610Silvery flower (tetraploid) 115.467
CNS0095611Silvery flower (tetraploid) 211.615
CNS0095612Silvery flower (tetraploid) 330.383
CNS0095613Golden flower (tetraploid) 110.491
CNS0095614Golden flower (tetraploid) 211.174
CNS0095615Golden flower (tetraploid) 37.735
CRA001975CRR073297Stem 19.155
CRR073298Stem 212.534
CRR073299Stem 315.049
CRR073300Leaf 128.164
CRR073301Leaf 233.009
CRR073302Leaf 332.302
CRR073303Juvenile bud 135.847
CRR073304Juvenile bud 234.713
CRR073305Juvenile bud 353.579
CRR073306Third green 137.493
CRR073307Third green 235.140
CRR073308Third green 334.137
CRR073309Second white 133.878
CRR073310Second white 223.500
CRR073311Second white 322.765
CRR073312Silver flowering 125.836
CRR073313Silver flowering 227.364
CRR073314Silver flowering 318.797
CRR073315Gold flowering 19.150
CRR073316Gold flowering 29.892
CRR073317Gold flowering 312.258
CRR073318Tawny withering 112.359
CRR073319Tawny withering 215.456
CRR073320Tawny withering 319.550