Gene detail

Detail information of GWHGAAZE016868

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009762029.1	4.5658E-119	PREDICTED: NAC domain-containing protein 78-like [Nicotiana sylvestris]
Swissprot	tr\|Q84K00\|NAC78_ARATH	1E-75	NAC domain-containing protein 78
trEMBL	tr\|K4D4K5\|K4D4K5_SOLLC	5E-113	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g005920.1.1}
TAIR10	AT5G09330.4	2E-72	NAC domain containing protein 82

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	84493701	84498782	-
GWHAAZE00000004	mRNA	84493701	84498782	-
GWHAAZE00000004	exon	84493701	84493820	-
GWHAAZE00000004	exon	84494306	84494719	-
GWHAAZE00000004	exon	84495641	84495718	-
GWHAAZE00000004	exon	84496381	84496755	-
GWHAAZE00000004	exon	84497806	84498083	-
GWHAAZE00000004	exon	84498384	84498629	-
GWHAAZE00000004	exon	84498755	84498782	-
GWHAAZE00000004	CDS	84498755	84498782	-
GWHAAZE00000004	CDS	84498384	84498629	-
GWHAAZE00000004	CDS	84497806	84498083	-
GWHAAZE00000004	CDS	84496381	84496755	-
GWHAAZE00000004	CDS	84495641	84495718	-
GWHAAZE00000004	CDS	84494306	84494719	-
GWHAAZE00000004	CDS	84493701	84493820	-

Transcript Sequence
>GWHTAAZE016888 ATGAACCGGCGTAGATTGTGGTGTTCTCACAAAATTGCTGTGGATAAGCGAGTGCTTTTTTTCTTAATTAACAAGAGACTTATTATTGGACATTGGGACGGTCTATTGTCATTCTCTATGGCAAGGGCGTCCCTTCCTCCTGGATTTCGATTTCATCCTACTGATGTTGAATTGGTTATGTACTACCTCAAGAGGAAGATAATGGGTAAAAAGCTCCAATTTGAAGCCATTTCAGAGCTCAACATATACAAATACTGTCCCTGGGATCTCAAAGATAAATCTTGCTTACGAAGTAAGGATCTTGAGTGGTTCTTCTTTTGCCCAAGAGAGAGGAAATATGCAAGCGGCGCAAGAACAAATCGTGCAACAGAAAGTGGATATTGGAAAACCACTGGAAAAGATAGACGAGTTATTTACAATGACAGAGCTGTGGGAATGGTTAAAACTTTGGTTTTTCACCTTGGACATGCACCACAAGGAAAACGAACTGATTGGGTTATGCATGAATATAGGTTCGAAGACAAAGATTTGCCTGATGCGGGAGTTGTTCAGGATGCATATGTGCTCTGTAAAGTTTTCAAGAAGAGTGGCCCAGGCCCAAAAAATGGTGCACAATATGGAGCTCCATTTAATGAGGATGATTATGACGATGAAGGAATCTGTGCTGAATCTTCTGCAGTTGATGAGTTGGCCCCACCTTTGGTTTCGCCGTCTAATAATATGAATGGTTCTTGTTCGACAAGCATGATTGGACCTGGGAATAGTATGAATATCTTGTCTTTTTCTGAACCGGGCCCATCTACTGCTGGACCTTCTGTTTCCGAGGTGTCTCCAGCTTTGCATAATAATGACGTGGATATGGATTCATTGTTGGCCGTGTTCAGAGTGGAAGGCACTTCACTTCCTGTCGAGACTGGCAATACTGAGGTCATAAGAAAGTCGTTCCACAAGTCAAACTGGCGGGTGAGGCAAGAGTCCTTCACTGCACTCACTGGACTAAACGGGGAGCTTGAAGCTCTTAATCCTGACGAGAACATTGCGGCCATAAATTGTTCAGATGGAAATGAAATATATAATGGCTTAGGTGACCTGGGTTACTTAGTGGACCCAAGTAACGGGGGATTTAACTTCTCCAACATTCCAGAAACTGATTATAATCCAATCCCTTTGCATATTACTGATGATACGGCCTTCTTGGAGCTTAACGATCTCAACACTCCGTTACCATTTCCTTCTGAAGCTAGTGGGTCCACAGCACATTTACACACTGCCAACTCGTTTGCACCTTACCCCTACTATGATAGTTATGAGCATTTCTGCCGTGAAGATAATTTTTTCGGTGATGTTCAAAATGTTTCTGCCTTGAATCAGTTGCCTCCGCTTCCTGAAAGTCTTGGGAGCCATTTCGATTCACTAAAGGAGAATGGCATTGGTAGTGGTGCAAATCAAGAAGAATACAGTGCTGCTACTTCAGGCAACATGTGTTTCACTCACAGACAGGCAGAGGGAAGTATGAATGCAGCAGAAGCCCAGATAAGA

Network for GWHGAAZE016868

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	46	171	9.70E-35

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.425
	SRR3591706	second leaf	23.350
	SRR3591707	mature leaf	32.300
	SRR3591708	Shoot apex	38.120
	SRR3591709	Stem	57.325
	SRR3591710	White floral bud	48.582
	SRR3591711	White flower	60.676
	SRR3591712	Green floral bud	45.369
	SRR3591713	Yellow flower	56.592
SRP173429	SRR8316895	Juvenile bud stage	28.444
	SRR8316896	Juvenile bud stage	35.113
	SRR8316897	Juvenile bud stage	24.436
	SRR8316894	Third green stage	11.073
	SRR8316900	Third green stage	28.437
	SRR8316901	Third green stage	29.990
	SRR8316898	Complete white stage	15.064
	SRR8316899	Complete white stage	62.822
	SRR8316903	Complete white stage	23.509
	SRR8316902	Silver flowering stage	20.269
	SRR8316904	Silver flowering stage	27.761
	SRR8316905	Silver flowering stage	10.816
	SRR8316906	Gold flowering stage	44.105
	SRR8316907	Gold flowering stage	31.168
	SRR8316908	Gold flowering stage	42.317
SRP132670	SRR6706286	Control	22.305
	SRR6706287	Light intensity 50%	26.765
	SRR6706288	Light intensity 20%	26.985
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.895
	CNS0095593	Slightly white alabastrum(diploid) 2	20.790
	CNS0095594	Slightly white alabastrum(diploid) 3	23.323
	CNS0095595	Whole white alabastrum(diploid) 2	19.150
	CNS0095596	Whole white alabastrum(diploid) 3	16.617
	CNS0095597	Whole white alabastrum(diploid) 4	19.753
	CNS0095598	Silvery flower (diploied) 1	26.425
	CNS0095599	Silvery flower (diploied) 2	27.631
	CNS0095600	Silvery flower (diploied) 3	44.406
	CNS0095601	Golden flower (diploid) 1	35.851
	CNS0095602	Golden flower (diploid) 2	50.936
	CNS0095603	Golden flower (diploid) 3	49.610
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.983
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.269
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.667
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.530
	CNS0095608	Whole white alabastrum(tetraploid) 2	16.623
	CNS0095609	Whole white alabastrum(tetraploid) 3	28.511
	CNS0095610	Silvery flower (tetraploid) 1	43.671
	CNS0095611	Silvery flower (tetraploid) 2	40.838
	CNS0095612	Silvery flower (tetraploid) 3	40.506
	CNS0095613	Golden flower (tetraploid) 1	27.486
	CNS0095614	Golden flower (tetraploid) 2	35.997
	CNS0095615	Golden flower (tetraploid) 3	50.181
CRA001975	CRR073297	Stem 1	30.488
	CRR073298	Stem 2	29.798
	CRR073299	Stem 3	22.820
	CRR073300	Leaf 1	27.967
	CRR073301	Leaf 2	28.548
	CRR073302	Leaf 3	21.241
	CRR073303	Juvenile bud 1	23.360
	CRR073304	Juvenile bud 2	15.548
	CRR073305	Juvenile bud 3	24.150
	CRR073306	Third green 1	12.174
	CRR073307	Third green 2	13.274
	CRR073308	Third green 3	14.064
	CRR073309	Second white 1	14.022
	CRR073310	Second white 2	22.238
	CRR073311	Second white 3	23.003
	CRR073312	Silver flowering 1	18.822
	CRR073313	Silver flowering 2	16.918
	CRR073314	Silver flowering 3	16.977
	CRR073315	Gold flowering 1	21.704
	CRR073316	Gold flowering 2	29.762
	CRR073317	Gold flowering 3	16.139
	CRR073318	Tawny withering 1	44.168
	CRR073319	Tawny withering 2	46.789
	CRR073320	Tawny withering 3	45.212