Detail information of GWHGAAZE016865


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010655208.10PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X2 [Vitis vinifera]
Swissprottr|Q6NQJ7|FRS4_ARATH0Protein FAR1-RELATED SEQUENCE 4
trEMBLtr|F6GYH1|F6GYH1_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45007.1}
TAIR10AT1G76320.10FAR1-related sequence 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8441316784415245+
GWHAAZE00000004mRNA8441316784415245+
GWHAAZE00000004exon8441316784415245+
GWHAAZE00000004CDS8441316784415245+
Transcript Sequence

Network for GWHGAAZE016865

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03101.16FAR1281142.60E-29
PF10551.10MULE2273204.40E-27
PF04434.18SWIM5145411.80E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyFAR1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.418
SRR3591706second leaf3.478
SRR3591707mature leaf5.953
SRR3591708Shoot apex4.881
SRR3591709Stem4.594
SRR3591710White floral bud12.945
SRR3591711White flower14.794
SRR3591712Green floral bud13.467
SRR3591713Yellow flower13.157
SRP173429 SRR8316895Juvenile bud stage 7.760
SRR8316896Juvenile bud stage 8.606
SRR8316897Juvenile bud stage 5.012
SRR8316894Third green stage 4.321
SRR8316900Third green stage 11.983
SRR8316901Third green stage 9.870
SRR8316898Complete white stage 4.935
SRR8316899Complete white stage 17.498
SRR8316903Complete white stage 8.392
SRR8316902Silver flowering stage6.540
SRR8316904Silver flowering stage10.389
SRR8316905Silver flowering stage4.272
SRR8316906Gold flowering stage 15.245
SRR8316907Gold flowering stage 14.054
SRR8316908Gold flowering stage 15.756
SRP132670SRR6706286Control10.849
SRR6706287Light intensity 50%10.136
SRR6706288Light intensity 20%10.454
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.545
CNS0095593Slightly white alabastrum(diploid) 25.918
CNS0095594Slightly white alabastrum(diploid) 34.132
CNS0095595Whole white alabastrum(diploid) 26.068
CNS0095596Whole white alabastrum(diploid) 35.662
CNS0095597Whole white alabastrum(diploid) 46.628
CNS0095598Silvery flower (diploied) 18.829
CNS0095599Silvery flower (diploied) 26.853
CNS0095600Silvery flower (diploied) 316.630
CNS0095601Golden flower (diploid) 18.029
CNS0095602Golden flower (diploid) 217.323
CNS0095603Golden flower (diploid) 316.330
CNS0095604Slightly white alabastrum(tetraploid) 16.831
CNS0095605Slightly white alabastrum(tetraploid) 26.287
CNS0095606Slightly white alabastrum(tetraploid) 312.666
CNS0095607Whole white alabastrum(tetraploid) 17.778
CNS0095608Whole white alabastrum(tetraploid) 28.100
CNS0095609Whole white alabastrum(tetraploid) 39.454
CNS0095610Silvery flower (tetraploid) 118.543
CNS0095611Silvery flower (tetraploid) 217.793
CNS0095612Silvery flower (tetraploid) 317.942
CNS0095613Golden flower (tetraploid) 19.187
CNS0095614Golden flower (tetraploid) 215.873
CNS0095615Golden flower (tetraploid) 321.990
CRA001975CRR073297Stem 19.419
CRR073298Stem 28.173
CRR073299Stem 37.601
CRR073300Leaf 110.000
CRR073301Leaf 27.045
CRR073302Leaf 36.201
CRR073303Juvenile bud 16.697
CRR073304Juvenile bud 25.565
CRR073305Juvenile bud 35.909
CRR073306Third green 14.746
CRR073307Third green 23.875
CRR073308Third green 34.298
CRR073309Second white 13.521
CRR073310Second white 26.821
CRR073311Second white 38.587
CRR073312Silver flowering 14.784
CRR073313Silver flowering 24.153
CRR073314Silver flowering 33.377
CRR073315Gold flowering 14.733
CRR073316Gold flowering 28.358
CRR073317Gold flowering 32.407
CRR073318Tawny withering 15.359
CRR073319Tawny withering 24.673
CRR073320Tawny withering 35.720