Detail information of GWHGAAZE016844


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP04685.13.71788E-61unnamed protein product [Coffea canephora]
Swissprottr|Q9FY84|PEN2_ARATH7E-53Probable gamma-secretase subunit PEN-2
trEMBLtr|A0A068U848|A0A068U848_COFCA1E-61Coffea canephora DH200=94 genomic scaffold, scaffold_13 {ECO:0000313|EMBL:CDP04685.1}
TAIR10AT5G09310.12E-42Without detailed annotation

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8398256383989035-
GWHAAZE00000004mRNA8398256383989035-
GWHAAZE00000004exon8398874183989035-
GWHAAZE00000004exon8398256383982723-
GWHAAZE00000004CDS8398874183989035-
GWHAAZE00000004CDS8398256383982723-
Transcript Sequence

Network for GWHGAAZE016844

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10251.10PEN-2541423.80E-26
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K06170PSENEN, PEN2 Notch signaling pathway map04330

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf63.044
SRR3591706second leaf30.868
SRR3591707mature leaf30.018
SRR3591708Shoot apex58.524
SRR3591709Stem52.089
SRR3591710White floral bud43.904
SRR3591711White flower42.602
SRR3591712Green floral bud60.927
SRR3591713Yellow flower38.979
SRP173429 SRR8316895Juvenile bud stage 36.516
SRR8316896Juvenile bud stage 56.601
SRR8316897Juvenile bud stage 28.116
SRR8316894Third green stage 24.580
SRR8316900Third green stage 93.296
SRR8316901Third green stage 90.389
SRR8316898Complete white stage 27.741
SRR8316899Complete white stage 77.300
SRR8316903Complete white stage 39.977
SRR8316902Silver flowering stage30.643
SRR8316904Silver flowering stage29.570
SRR8316905Silver flowering stage16.663
SRR8316906Gold flowering stage 47.975
SRR8316907Gold flowering stage 51.860
SRR8316908Gold flowering stage 48.070
SRP132670SRR6706286Control80.753
SRR6706287Light intensity 50%80.333
SRR6706288Light intensity 20%90.163
CNP0000432CNS0095592Slightly white alabastrum(diploid) 162.064
CNS0095593Slightly white alabastrum(diploid) 268.297
CNS0095594Slightly white alabastrum(diploid) 356.982
CNS0095595Whole white alabastrum(diploid) 259.838
CNS0095596Whole white alabastrum(diploid) 372.029
CNS0095597Whole white alabastrum(diploid) 451.105
CNS0095598Silvery flower (diploied) 139.293
CNS0095599Silvery flower (diploied) 241.981
CNS0095600Silvery flower (diploied) 361.479
CNS0095601Golden flower (diploid) 139.462
CNS0095602Golden flower (diploid) 249.516
CNS0095603Golden flower (diploid) 345.336
CNS0095604Slightly white alabastrum(tetraploid) 160.425
CNS0095605Slightly white alabastrum(tetraploid) 262.734
CNS0095606Slightly white alabastrum(tetraploid) 370.502
CNS0095607Whole white alabastrum(tetraploid) 157.399
CNS0095608Whole white alabastrum(tetraploid) 244.511
CNS0095609Whole white alabastrum(tetraploid) 367.912
CNS0095610Silvery flower (tetraploid) 168.051
CNS0095611Silvery flower (tetraploid) 266.227
CNS0095612Silvery flower (tetraploid) 349.192
CNS0095613Golden flower (tetraploid) 144.621
CNS0095614Golden flower (tetraploid) 254.941
CNS0095615Golden flower (tetraploid) 347.764
CRA001975CRR073297Stem 157.162
CRR073298Stem 251.302
CRR073299Stem 377.781
CRR073300Leaf 162.248
CRR073301Leaf 274.695
CRR073302Leaf 379.483
CRR073303Juvenile bud 178.928
CRR073304Juvenile bud 281.603
CRR073305Juvenile bud 376.990
CRR073306Third green 132.430
CRR073307Third green 242.311
CRR073308Third green 328.478
CRR073309Second white 135.921
CRR073310Second white 226.206
CRR073311Second white 321.022
CRR073312Silver flowering 121.416
CRR073313Silver flowering 227.349
CRR073314Silver flowering 315.083
CRR073315Gold flowering 130.768
CRR073316Gold flowering 230.036
CRR073317Gold flowering 332.992
CRR073318Tawny withering 147.772
CRR073319Tawny withering 248.036
CRR073320Tawny withering 341.306