Gene detail

Detail information of GWHGAAZE016794

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010649354.1	PREDICTED: DNA topoisomerase 3-alpha isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9LVP1\|TOP3A_ARATH	DNA topoisomerase 3-alpha
trEMBL	tr\|A0A022PYK0\|A0A022PYK0_ERYGU	DNA topoisomerase {ECO:0000256\|RuleBase:RU000518}
TAIR10	AT5G63920.1	topoisomerase 3alpha

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	83046024	83062477	+
GWHAAZE00000004	mRNA	83046024	83062477	+
GWHAAZE00000004	exon	83046024	83046479	+
GWHAAZE00000004	exon	83047168	83047346	+
GWHAAZE00000004	exon	83047438	83047510	+
GWHAAZE00000004	exon	83047766	83047888	+
GWHAAZE00000004	exon	83048118	83048239	+
GWHAAZE00000004	exon	83048332	83048404	+
GWHAAZE00000004	exon	83048719	83048835	+
GWHAAZE00000004	exon	83049966	83050049	+
GWHAAZE00000004	exon	83051597	83051776	+
GWHAAZE00000004	exon	83052622	83052750	+
GWHAAZE00000004	exon	83053566	83053640	+
GWHAAZE00000004	exon	83055324	83055413	+
GWHAAZE00000004	exon	83055566	83055670	+
GWHAAZE00000004	exon	83055789	83055823	+
GWHAAZE00000004	exon	83056820	83056949	+
GWHAAZE00000004	exon	83057938	83057990	+
GWHAAZE00000004	exon	83058070	83058169	+
GWHAAZE00000004	exon	83058998	83059040	+
GWHAAZE00000004	exon	83059919	83059990	+
GWHAAZE00000004	exon	83060573	83060653	+
GWHAAZE00000004	exon	83061680	83061844	+
GWHAAZE00000004	exon	83061983	83062103	+
GWHAAZE00000004	exon	83062348	83062477	+
GWHAAZE00000004	five_prime_UTR	83046024	83046173	+
GWHAAZE00000004	CDS	83046174	83046479	+
GWHAAZE00000004	CDS	83047168	83047346	+
GWHAAZE00000004	CDS	83047438	83047510	+
GWHAAZE00000004	CDS	83047766	83047888	+
GWHAAZE00000004	CDS	83048118	83048239	+
GWHAAZE00000004	CDS	83048332	83048404	+
GWHAAZE00000004	CDS	83048719	83048835	+
GWHAAZE00000004	CDS	83049966	83050049	+
GWHAAZE00000004	CDS	83051597	83051776	+
GWHAAZE00000004	CDS	83052622	83052750	+
GWHAAZE00000004	CDS	83053566	83053640	+
GWHAAZE00000004	CDS	83055324	83055413	+
GWHAAZE00000004	CDS	83055566	83055670	+
GWHAAZE00000004	CDS	83055789	83055823	+
GWHAAZE00000004	CDS	83056820	83056949	+
GWHAAZE00000004	CDS	83057938	83057990	+
GWHAAZE00000004	CDS	83058070	83058169	+
GWHAAZE00000004	CDS	83058998	83059040	+
GWHAAZE00000004	CDS	83059919	83059990	+
GWHAAZE00000004	CDS	83060573	83060653	+
GWHAAZE00000004	CDS	83061680	83061844	+
GWHAAZE00000004	CDS	83061983	83062103	+
GWHAAZE00000004	CDS	83062348	83062477	+

Transcript Sequence
>GWHTAAZE016814 GTGAACTTGTAATTTCGCCAATTTGCGGCATAACAGTGCCCACCCACCCCCACTTGCCGGGCGCGGGAAACACAAAAATTCGTCCTAGCTTGTGAAATTGAAATACATACAAAATCCAATCAAAAACCCTTTGCCTTTGGGAGTTAAAAAATGGCCGGCGGTGGTGGGCGAGGAGGGATGATAAAGGTACTAAACGTGGCGGAGAAACCGTCAGTGGCGAAAGCAGTGTCGGGCATACTGTCGAGAGGCCAAGGGCTGAGGGTGAGAGAGGGGCGTTCCAGGTACAACAAGATTTTCGAGTTCGTCTACACCATTAACGGCCAACAATGTCAGATGTCATTCACTTCCGTTACTGGACATCTCATGGAGCTCGAGTTCGAAGACCGCTACCGGAAATGGCATTCCTGTGATCCGGTGGATCTCTATAATGCCCCTGTTCGTAAGCATGTCCCTCAGGACAAGTTAGATATCAAGAGGACATTAGAGGAGGAAGCTAGAAAATGCCAGTGGCTTGTGTTGTGGCTTGATTGTGATCGAGAAGGAGAAAACATTGCATTTGAAGTAGTTGAAGTTTGTACGCATGTGAATCCGAATCTTAACGTGTGGAGAGCTCGTTTCTCTGCATTAATTGAAAGGGATATCCATGACTCCGTGCGGAATCTCGTTCGACCTAATCAATTATTCTCCGATGCAGTAGATGTTAGGCAAGAAATAGATCTACGTATTGGTGCTTCCTTCACTAGGTTTCAGACCATGCTGCTCAAAGATGCATTTGTTATTGATTTTGCTACAGATGACAGAAATCTTGTTCTAAGTTACGGTCCTTGCCAGTTCCCTACACTTGGCTTTATTGTGGAACGTTATTGGGAGATACAATCACATGAACCGGAAGAGTTCTGGACAATTAACTGTACTCACAACTCGGATGAAGGAACCGCTACCTTCAATTGGATGCGTGGGCATTTGTTTGACTACACTTGCGCAGTAGTAATTTACGAAATGTGTGTTCAAGAACCCACTGCAAGTGTCACAAAAGTTAGAAATCAGGAGAAATTGAAATATCCTCCTCATCCTTTAAATACTATTGAGCTTGAGAAACGTGCATCGCGTTACTTTCGGATGAGTTCTGAGCACACCATGAAGGTGGCAGAAGATCTTTACCAAGCTGGTTTCATCAGTTATCCTCGTACTGAAACAGACTCTTTTTCAGAGAGGACAGATTTGCATACAATTGTGCGAGAACAACAGGGGCATCCTGCATGGGGTGCATATGCGCAGAGATTGTTGGACCCTGGAGCTGGGCTATGGAGAAACCCAAGTGGTGGTGGACATGATGATAAAGCTCATCCTCCTATTCACCCTACAAAATTTTCTACCGGAGAATCTGGATGGAGTCAAGACCATCGTACATTGTATGAGCTGGTTGTTCGCCATTTCCTGGCCTGTGTTTCTAAGCCAGCCGTAGGGGCTGAAACTACAGTTGAAATTGACATTGCAGGAGAATCTTTTTCTGCTACTGGCAGAGTGATACTTGCTAAAAATTATCTGGAAGTTTACCGATTTGAATCGTGGGGAGGATCAGTGATCCCAACATTCACTCAGGGGCAACAGTTTACCCCGACAACCTTGAATCTTGACTCGGGGGTTACTAGACCACCGCCCCTTTTAAGTGAAGCTGACCTTCTAAATTGTATGGACAAGGCTGGCATTGGCACAGATGCCACGATGCATGATCACATTAAGAAGCTGCTTGACCGGTTTTATGCAACGAAAGACGCAAACACTCGTTTCTCGCCAACAAATCTTGGTGAGGCGCTTGTTATGGGATATGATGACATGGGATACGAATTGTGGAAGCCATATCTCCGTGCTATGATGGAGTGTGACATGAAAGCAGTTAGCGTAGGCACGAAGAGAAAAGCTGAAGTTTTGGCAACTTGCTTGCAGCAGATGAAAACGTGCTTCTTAGATGCTAGATTGAACAAAGTAAAACTCTTTGAAGCCATGGGAATTTTCTTTGAGAGATCAAACAGATCAGGTGGAGACGACCAGCACTCAGTTGGAGATGTTGTTCGGAGATGTGGTGTTTGCCGGGAATCAGATATGGTGTTGAGGCGAAAACCGGATGGAAATTTCATGGTTGGGTGCTTGGGTTACCCACAAGTAGGACCGGTTTACATGATTCAGTTTAAGTTTCGCCGGCTGGAAATACCACCAAACTACAATGTCGACCATTTAGGTTGCATTGGTGGCTGTGACAATACTCTGAGGCAGCTGATCGAAGTATGTGGTACAGGTTCTCGCATTCCCACCGTCCCTGCAAGAGGACGAGGGGGAGCCACTGCATCTTCCACTAGCAGCGCCCAACGAAGTATCCCAAGGCAGCAGAATGCTTGTATCCACTGTCGGCAGATGGGGCATTCTTCAATGGATTGCCCCACACGTAGACCTCAATCGCGGCCTCAAGGAATGGACCCACAAAATGGAGAATCGTCAGTTCCTTGTAATAAATGTGGTGCACCTTGCCCTTTGCGAACTGCTAACACTGCAAATAACAGGGGGAAAAAGTTCTACTCCTGTCAGTCGCATGACTGCAACTTCTTTGTGTGGGAGGATAATCTGAACGGGATAAATGGTCCGTCGGGTCCCCATTCTTCAACTATGGGGGGCAGCTCGGAGAGGGAGGGGAGAGGGAGGGGAGTGGCAGAGGGAGACAAGCCGCTGCCAATGACGTAA

Network for GWHGAAZE016794

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01751.23	Toprim	14	158	1.40E-16
PF01131.21	Topoisom_bac	175	594	1.50E-109
PF06839.13	zf-GRF	784	823	1.20E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03165	TOP3	Homologous recombination	map03440
K03165	TOP3	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006265	biological_process	DNA topological change
GO:0003677	molecular_function	DNA binding
GO:0003916	molecular_function	DNA topoisomerase activity
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding
GO:0003917	molecular_function	DNA topoisomerase type I (single strand cut, ATP-independent) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.192
	SRR3591706	second leaf	1.817
	SRR3591707	mature leaf	1.435
	SRR3591708	Shoot apex	9.900
	SRR3591709	Stem	1.316
	SRR3591710	White floral bud	1.064
	SRR3591711	White flower	1.067
	SRR3591712	Green floral bud	1.423
	SRR3591713	Yellow flower	0.975
SRP173429	SRR8316895	Juvenile bud stage	1.665
	SRR8316896	Juvenile bud stage	2.072
	SRR8316897	Juvenile bud stage	1.867
	SRR8316894	Third green stage	0.482
	SRR8316900	Third green stage	1.361
	SRR8316901	Third green stage	0.990
	SRR8316898	Complete white stage	0.185
	SRR8316899	Complete white stage	0.740
	SRR8316903	Complete white stage	0.595
	SRR8316902	Silver flowering stage	0.018
	SRR8316904	Silver flowering stage	0.079
	SRR8316905	Silver flowering stage	0.048
	SRR8316906	Gold flowering stage	0.249
	SRR8316907	Gold flowering stage	0.375
	SRR8316908	Gold flowering stage	0.666
SRP132670	SRR6706286	Control	1.474
	SRR6706287	Light intensity 50%	1.805
	SRR6706288	Light intensity 20%	1.985
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.534
	CNS0095593	Slightly white alabastrum(diploid) 2	1.211
	CNS0095594	Slightly white alabastrum(diploid) 3	1.023
	CNS0095595	Whole white alabastrum(diploid) 2	0.968
	CNS0095596	Whole white alabastrum(diploid) 3	0.907
	CNS0095597	Whole white alabastrum(diploid) 4	0.941
	CNS0095598	Silvery flower (diploied) 1	1.282
	CNS0095599	Silvery flower (diploied) 2	0.950
	CNS0095600	Silvery flower (diploied) 3	0.414
	CNS0095601	Golden flower (diploid) 1	0.696
	CNS0095602	Golden flower (diploid) 2	0.615
	CNS0095603	Golden flower (diploid) 3	0.777
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.898
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.390
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.589
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.248
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.614
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.746
	CNS0095610	Silvery flower (tetraploid) 1	2.598
	CNS0095611	Silvery flower (tetraploid) 2	1.776
	CNS0095612	Silvery flower (tetraploid) 3	1.256
	CNS0095613	Golden flower (tetraploid) 1	0.875
	CNS0095614	Golden flower (tetraploid) 2	1.631
	CNS0095615	Golden flower (tetraploid) 3	0.646
CRA001975	CRR073297	Stem 1	3.334
	CRR073298	Stem 2	2.222
	CRR073299	Stem 3	2.298
	CRR073300	Leaf 1	2.136
	CRR073301	Leaf 2	1.389
	CRR073302	Leaf 3	0.762
	CRR073303	Juvenile bud 1	0.922
	CRR073304	Juvenile bud 2	0.150
	CRR073305	Juvenile bud 3	1.436
	CRR073306	Third green 1	0.031
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.076
	CRR073309	Second white 1	0.030
	CRR073310	Second white 2	0.050
	CRR073311	Second white 3	0.054
	CRR073312	Silver flowering 1	0.036
	CRR073313	Silver flowering 2	0.151
	CRR073314	Silver flowering 3	0.137
	CRR073315	Gold flowering 1	0.040
	CRR073316	Gold flowering 2	0.364
	CRR073317	Gold flowering 3	0.130
	CRR073318	Tawny withering 1	1.741
	CRR073319	Tawny withering 2	1.893
	CRR073320	Tawny withering 3	2.681