Gene detail

Detail information of GWHGAAZE016751

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_006340028.1	PREDICTED: calcium-dependent protein kinase SK5-like [Solanum tuberosum]
Swissprot	tr\|P28583\|CDPK_SOYBN	Calcium-dependent protein kinase SK5
trEMBL	tr\|K4BRP4\|K4BRP4_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc04g049160.2.1}
TAIR10	AT1G35670.1	calcium-dependent protein kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	82060835	82066855	+
GWHAAZE00000004	mRNA	82060835	82066855	+
GWHAAZE00000004	exon	82060835	82061411	+
GWHAAZE00000004	exon	82063946	82064089	+
GWHAAZE00000004	exon	82064187	82064339	+
GWHAAZE00000004	exon	82064451	82064566	+
GWHAAZE00000004	exon	82065652	82065819	+
GWHAAZE00000004	exon	82065946	82066170	+
GWHAAZE00000004	exon	82066529	82066691	+
GWHAAZE00000004	exon	82066833	82066855	+
GWHAAZE00000004	CDS	82060835	82061411	+
GWHAAZE00000004	CDS	82063946	82064089	+
GWHAAZE00000004	CDS	82064187	82064339	+
GWHAAZE00000004	CDS	82064451	82064566	+
GWHAAZE00000004	CDS	82065652	82065819	+
GWHAAZE00000004	CDS	82065946	82066170	+
GWHAAZE00000004	CDS	82066529	82066691	+
GWHAAZE00000004	CDS	82066833	82066855	+

Transcript Sequence
>GWHTAAZE016771 ATGTCTTCATCAGCAAACCCACAAACAGAAATGAAGAAATCAACCCAACAAAATCCACCATCAAAACCCAGCTGGGTTCTTCCTTATCAGACTGAGAACCTCCAAAAACACTACACAATTGGCAAGAAGTTAGGGCAAGGCCAATTTGGGACAACTTATCTCTGTACCCACAAAACCACTTCCACTCATTATGCCTGCAAATCCATACCCAAGAAGAAACTCCTCTGCAAGGAGGATTACGACGACGTATTGAGGGAGATTAAGATAATGCACCATTTGTCTGAACACCCAAATGTTGTGAGAATTAAGGGTACTTATGAAGATCCACTTTATGTTCACATAGTGATGGAGCTTTGTGCGGGTGGAGAGCTTTTTGATAGGATTGTTTCAAAAGGACATTATAGTGAAAAAGAGGCTGCTAAGTTAATTAAGACTATTGTTGGGGTTGTTGAGGCTTGTCATTCTTTGGGTGTTATGCATAGAGACCTTAAGCCTGAGAACTTTTTGTTTACTAGTACCGATGAAGATGCTGCTCTTAAGGCCACTGATTTTGGCTTGTCTGTATTCTACAAGCCAGGTGAAACATTTTGTGATGTAGTTGGTAGTCCATACTATGTAGCACCAGAGGTTTTACGCAAGCTTTATGGACCTGAATCTGATGTTTGGAGTGCCGGTGTTATTCTCTACATCCTACTTAGCGGTGTTCCTCCTTTTTGGGCTGAAACTGAAGTGGGGATCTTCAGGCAGATATTACAAGCGAAATTAGACTTCGAATCTGAACCATGGCCTGGGATTTCAGACAGTGCCAAGGATCTGATACGTAAAATGCTCACTAGAAATCCAAAGGCACGTATTACTGCCCATGAAGTATTATGCCACCCGTGGATTGTTGATGACAGAATGGCACCCGATAAGCCTCTTGATTCTGCTGTGCTCTCACGCCTTAAGCAGTTCTCTGCTATGAATAAGCTTAAGAAGATGGCATTGCGTGTAATAGCAGAGAAGCTATCAGAAGAAGAGATTGGTGGGTTGAAGGAGTTGTTTCAAATGATAGACACCGACAACAGTGGAACCATTACTTTTGATGAACTGAAAGAGGGCTTGAGACGAGTTGGTTCTGAACTCATGGAGTCTGAGATCAAGGATCTCATGGATGCAGCGGATATTGACAACAGTGGATCAATAGACTATGGTGAATTTCTGGCTGCGACGGTGCACTTGAACAAGTTGGAGAGGGAGGAGAATTTGGTGTCGGCTTTCTCCTTCTTTGACAAAGATGGTAGTGGCTTCATTACCATTGATGAGCTTCAACAAGCCTGCATTGAGTTTGGTTTAAGCGAAGTCCACCTAGATGAGATGATCAAAGAAGTTGATCAGGATAATGATGGACAGATAGATTATGGGGAATTTGCGGCGATGATGAGGAAAGGGAATAGTGGAGGAATAGGGAGGAGAACTATGATGAGAAGCAATTTGAACTTGGCTGATGCTTTTGGTGTTGGTGGTGCTGGACAACTAACAACATCAGAAGCTGCTTCTTCTTCTAGTTGGGCTGCAGCTGCTTCTTAG

Network for GWHGAAZE016751

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	38	296	2.00E-75
PF13499.7	EF-hand_7	344	404	1.90E-11
PF13499.7	EF-hand_7	414	475	2.50E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_CDPK

KEGG pathway

KO	Enzyme	pathway	mapID
K13412	CPK	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005509	molecular_function	calcium ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	76.424
	SRR3591706	second leaf	25.598
	SRR3591707	mature leaf	26.051
	SRR3591708	Shoot apex	44.129
	SRR3591709	Stem	60.704
	SRR3591710	White floral bud	66.782
	SRR3591711	White flower	82.826
	SRR3591712	Green floral bud	50.487
	SRR3591713	Yellow flower	53.913
SRP173429	SRR8316895	Juvenile bud stage	21.134
	SRR8316896	Juvenile bud stage	28.034
	SRR8316897	Juvenile bud stage	14.302
	SRR8316894	Third green stage	15.663
	SRR8316900	Third green stage	37.672
	SRR8316901	Third green stage	37.386
	SRR8316898	Complete white stage	28.249
	SRR8316899	Complete white stage	73.469
	SRR8316903	Complete white stage	47.452
	SRR8316902	Silver flowering stage	22.757
	SRR8316904	Silver flowering stage	34.073
	SRR8316905	Silver flowering stage	16.538
	SRR8316906	Gold flowering stage	48.813
	SRR8316907	Gold flowering stage	51.407
	SRR8316908	Gold flowering stage	62.308
SRP132670	SRR6706286	Control	26.252
	SRR6706287	Light intensity 50%	26.296
	SRR6706288	Light intensity 20%	28.915
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	26.558
	CNS0095593	Slightly white alabastrum(diploid) 2	30.156
	CNS0095594	Slightly white alabastrum(diploid) 3	22.372
	CNS0095595	Whole white alabastrum(diploid) 2	26.326
	CNS0095596	Whole white alabastrum(diploid) 3	18.189
	CNS0095597	Whole white alabastrum(diploid) 4	18.471
	CNS0095598	Silvery flower (diploied) 1	48.335
	CNS0095599	Silvery flower (diploied) 2	31.460
	CNS0095600	Silvery flower (diploied) 3	61.354
	CNS0095601	Golden flower (diploid) 1	32.593
	CNS0095602	Golden flower (diploid) 2	53.086
	CNS0095603	Golden flower (diploid) 3	49.955
	CNS0095604	Slightly white alabastrum(tetraploid) 1	22.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.373
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.522
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.971
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.817
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.150
	CNS0095610	Silvery flower (tetraploid) 1	62.501
	CNS0095611	Silvery flower (tetraploid) 2	50.863
	CNS0095612	Silvery flower (tetraploid) 3	37.872
	CNS0095613	Golden flower (tetraploid) 1	28.929
	CNS0095614	Golden flower (tetraploid) 2	46.318
	CNS0095615	Golden flower (tetraploid) 3	38.096
CRA001975	CRR073297	Stem 1	32.735
	CRR073298	Stem 2	31.724
	CRR073299	Stem 3	31.201
	CRR073300	Leaf 1	36.483
	CRR073301	Leaf 2	37.685
	CRR073302	Leaf 3	33.527
	CRR073303	Juvenile bud 1	36.767
	CRR073304	Juvenile bud 2	34.587
	CRR073305	Juvenile bud 3	62.397
	CRR073306	Third green 1	24.044
	CRR073307	Third green 2	29.017
	CRR073308	Third green 3	27.355
	CRR073309	Second white 1	28.027
	CRR073310	Second white 2	27.884
	CRR073311	Second white 3	24.510
	CRR073312	Silver flowering 1	26.097
	CRR073313	Silver flowering 2	23.268
	CRR073314	Silver flowering 3	22.558
	CRR073315	Gold flowering 1	22.721
	CRR073316	Gold flowering 2	31.512
	CRR073317	Gold flowering 3	24.813
	CRR073318	Tawny withering 1	46.176
	CRR073319	Tawny withering 2	34.278
	CRR073320	Tawny withering 3	50.710