Gene detail

Detail information of GWHGAAZE016728

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010242684.1	3.8093E-169	PREDICTED: serine/threonine-protein kinase SRK2A isoform X1 [Nelumbo nucifera]
Swissprot	tr\|Q7XQP4\|SAPK7_ORYSJ	4E-159	Serine/threonine-protein kinase SAPK7
trEMBL	tr\|A0A0A0KYK0\|A0A0A0KYK0_CUCSA	2E-167	Uncharacterized protein {ECO:0000313\|EMBL:KGN54755.1}
TAIR10	AT5G08590.1	5E-126	SNF1-related protein kinase 2.1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81651264	81662017	+
GWHAAZE00000004	mRNA	81651264	81662017	+
GWHAAZE00000004	exon	81651264	81651449	+
GWHAAZE00000004	exon	81651839	81651940	+
GWHAAZE00000004	exon	81652418	81652510	+
GWHAAZE00000004	exon	81658969	81659061	+
GWHAAZE00000004	exon	81660621	81660725	+
GWHAAZE00000004	exon	81660835	81660933	+
GWHAAZE00000004	exon	81661382	81661560	+
GWHAAZE00000004	exon	81661999	81662017	+
GWHAAZE00000004	five_prime_UTR	81651264	81651329	+
GWHAAZE00000004	CDS	81651330	81651449	+
GWHAAZE00000004	CDS	81651839	81651940	+
GWHAAZE00000004	CDS	81652418	81652510	+
GWHAAZE00000004	CDS	81658969	81659061	+
GWHAAZE00000004	CDS	81660621	81660725	+
GWHAAZE00000004	CDS	81660835	81660933	+
GWHAAZE00000004	CDS	81661382	81661560	+
GWHAAZE00000004	CDS	81661999	81662017	+

Transcript Sequence
>GWHTAAZE016748 CAACCAATAGTTCAATAGTTATAGTATACCTAGCTAGTGAGAAGAGAGAGTAAAATCGTGCGCGCGATGGAGAAGTACGAGGTAGTGAAAGACATAGGATCTGGGAACTTTGGGGTGGCAAGGCTTATGAAGCACAAAGATACCAAGCAGCTTGTTGCCATGAAATACATCGAGCGCGGGCACAAGGTAATATTAACGGCGACGCACCTGGCAATTGTGATGGAGTATGCAGCGGGAGGAGAACTCTTTGACCGGATCTGCAACGCCGGTAGATTTAGTGAAGCTGAGCAAATATGTCATAGAGATTTGAAGCTGGAGAATACGCTATTAGATGACAGTCCAGCACCTCGTCTTAAGATCTGTGATTTTGGTTACTCCAAGTCATCTTTGCTGCATTCAAGACCGAAATCGACGGTTGGAACTCCAGCTTATATAGCACCTGAGGTTCTTTCTCGCCATGAATACGACGGCAAGTTGGCTGATGTATGGTCATGTGGAGTTACTTTGTATGTTATGTTGGTGGGAGCATACCCATTTGAGGATCCAGAGGACCCCAAAAATTTCAGAAAAACAATTGGAAGAATAATGGCTACTCAATACAAAATCCCTGACTATGTCCACATATCCCAAGACTGTAGACAACTCCTTTCTCGCATATTTGTTGCAAATCCTTCCAGGAGAATTACAATAAAAGAAATAAAGAACCACCCATGGTTCTTAAAGAACTTGCCAAGGGAGCTGATGGAGTCGGCACAGGCCATCTACTACCAAAGAGATAATCCGAGCTTTTATCTTCAAAGCGTTGATGAGATAATGAAAATAGTAGGAGACGCAAGAATCCCACCTCCTTCATCCAGGTTCATGACCAAAACATAA

Network for GWHGAAZE016728

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	74	217	1.30E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CAMK_OST1L

KEGG pathway

KO	Enzyme	pathway	mapID
K14498	SNRK2	MAPK signaling pathway - plant	map04016
K14498	SNRK2	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.428
	SRR3591711	White flower	0.149
	SRR3591712	Green floral bud	6.616
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.617
	SRR8316896	Juvenile bud stage	2.294
	SRR8316897	Juvenile bud stage	2.194
	SRR8316894	Third green stage	2.759
	SRR8316900	Third green stage	22.203
	SRR8316901	Third green stage	14.291
	SRR8316898	Complete white stage	4.386
	SRR8316899	Complete white stage	19.203
	SRR8316903	Complete white stage	6.055
	SRR8316902	Silver flowering stage	2.447
	SRR8316904	Silver flowering stage	23.574
	SRR8316905	Silver flowering stage	1.983
	SRR8316906	Gold flowering stage	4.395
	SRR8316907	Gold flowering stage	1.072
	SRR8316908	Gold flowering stage	5.989
SRP132670	SRR6706286	Control	23.877
	SRR6706287	Light intensity 50%	22.047
	SRR6706288	Light intensity 20%	24.563
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.108
	CNS0095593	Slightly white alabastrum(diploid) 2	6.269
	CNS0095594	Slightly white alabastrum(diploid) 3	3.720
	CNS0095595	Whole white alabastrum(diploid) 2	12.602
	CNS0095596	Whole white alabastrum(diploid) 3	29.866
	CNS0095597	Whole white alabastrum(diploid) 4	11.725
	CNS0095598	Silvery flower (diploied) 1	4.137
	CNS0095599	Silvery flower (diploied) 2	5.958
	CNS0095600	Silvery flower (diploied) 3	3.837
	CNS0095601	Golden flower (diploid) 1	2.494
	CNS0095602	Golden flower (diploid) 2	1.819
	CNS0095603	Golden flower (diploid) 3	1.750
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.242
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.695
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.294
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.922
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.257
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.172
	CNS0095610	Silvery flower (tetraploid) 1	20.538
	CNS0095611	Silvery flower (tetraploid) 2	7.631
	CNS0095612	Silvery flower (tetraploid) 3	16.819
	CNS0095613	Golden flower (tetraploid) 1	0.413
	CNS0095614	Golden flower (tetraploid) 2	21.571
	CNS0095615	Golden flower (tetraploid) 3	14.953
CRA001975	CRR073297	Stem 1	0.700
	CRR073298	Stem 2	1.553
	CRR073299	Stem 3	0.297
	CRR073300	Leaf 1	7.996
	CRR073301	Leaf 2	6.060
	CRR073302	Leaf 3	3.752
	CRR073303	Juvenile bud 1	8.377
	CRR073304	Juvenile bud 2	11.618
	CRR073305	Juvenile bud 3	7.617
	CRR073306	Third green 1	3.237
	CRR073307	Third green 2	9.067
	CRR073308	Third green 3	18.129
	CRR073309	Second white 1	2.525
	CRR073310	Second white 2	1.466
	CRR073311	Second white 3	0.205
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.055
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.010
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000