Gene detail

Detail information of GWHGAAZE016712

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006490395.1	0	PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like isoform X1 [Citrus sinensis]
Swissprot	tr\|P20866\|CB2_PHYPA	2E-64	Chlorophyll a-b binding protein, chloroplastic (Precursor)
trEMBL	tr\|A0A067ELF5\|A0A067ELF5_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO52037.1}
TAIR10	AT1G76570.1	3E-144	Chlorophyll A-B binding family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81351892	81358421	+
GWHAAZE00000004	mRNA	81351892	81358421	+
GWHAAZE00000004	exon	81351892	81352038	+
GWHAAZE00000004	exon	81352149	81352315	+
GWHAAZE00000004	exon	81355031	81355177	+
GWHAAZE00000004	exon	81356510	81356642	+
GWHAAZE00000004	exon	81357109	81357201	+
GWHAAZE00000004	exon	81358119	81358421	+
GWHAAZE00000004	CDS	81351892	81352038	+
GWHAAZE00000004	CDS	81352149	81352315	+
GWHAAZE00000004	CDS	81355031	81355177	+
GWHAAZE00000004	CDS	81356510	81356642	+
GWHAAZE00000004	CDS	81357109	81357201	+
GWHAAZE00000004	CDS	81358119	81358421	+

Transcript Sequence
>GWHTAAZE016732 ATGGCTATGCTGCTTCACACATCCTACTCCTCTACTTCGTCCTCTTTTCTCAACGACGGTTTCCATTCAAAACTCCTCCTCCCGAAATCTCGTCGCCAACGTTTAAACCCCAAGTCTCTTAAGATCTGTACAGCTTCATGGCAAGAGCTTGCCGGGGTTTTGATATTCTCAGCGATTCCTTTCACCGCAGTCAAAGCCATTGCCAACAGTCCCCTTGGCGAGTCCCTACAGAGGCGAATGGAGGACACCAAGAAGGTTTCTCTGGAAAATTCTTCAAAGTTCAAGGCACTTTCACTCAAAGCCAGAAATGATAGCTTGTGGTATGGTGAGGGGCGTCCTCGTTGGCTTGGGCCTATCCCATATGACTATCCTGCCTATCTCAATGGAGAACTACCTGGGGATTATGGCTTTGATATTGCTGGTCTGAGCAAGGATTCTTTGGCTCTCCAAAAATACTTCAATTTCGAAATACTGCATGCTCGCTGGGCTATGCTTGCAGCCATGGGTGCTTTGATTCCAGAATTACTAGATCTAGTTGGAGCCTTTCACTTTGTTGAACCTGTCTGGTGGCGAGTGGGCTATTCAAAGCTCCAGGGAGATACACTGGACTACCTTGGCATCCCTGGATTCCACTTAGCTGGAGGTCAAGGAGTTATAGTCATAGCCATCTGCCAAGCCCTTTTGATGGTAGGACCAGAATATGCAAGATATTGCGGGATTGAGGCTCTCGAGCCTCTAGGAATTTACTTGCCTGGTGACATTAATTATCCTGGAGGTACGCTTTTTGATCCCTTGAATCTCTCTAAAGACCCTGCAACTTTTGAAGAACTGAAGGTTAAAGAGATTAAAAATGGGCGCTTAGCTATGATTGCTTGGGTAGGCTTTTATACACAAGCGGCTCTAACGGGTAAGGGTCCTGTACAAAACCTTGTTGACCACATCTCCGATCCTATCCATAATAACCTCATTTCTGTCCTTGGGTCCATGTAA

Network for GWHGAAZE016712

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	124	299	1.20E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14172	LHCB7	Metabolic pathways	map01100
K14172	LHCB7	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.533
	SRR3591706	second leaf	38.139
	SRR3591707	mature leaf	46.274
	SRR3591708	Shoot apex	31.563
	SRR3591709	Stem	23.990
	SRR3591710	White floral bud	14.597
	SRR3591711	White flower	13.564
	SRR3591712	Green floral bud	20.921
	SRR3591713	Yellow flower	16.006
SRP173429	SRR8316895	Juvenile bud stage	17.019
	SRR8316896	Juvenile bud stage	22.833
	SRR8316897	Juvenile bud stage	11.514
	SRR8316894	Third green stage	8.915
	SRR8316900	Third green stage	22.674
	SRR8316901	Third green stage	21.491
	SRR8316898	Complete white stage	6.413
	SRR8316899	Complete white stage	30.915
	SRR8316903	Complete white stage	12.429
	SRR8316902	Silver flowering stage	4.616
	SRR8316904	Silver flowering stage	5.147
	SRR8316905	Silver flowering stage	3.478
	SRR8316906	Gold flowering stage	10.659
	SRR8316907	Gold flowering stage	8.510
	SRR8316908	Gold flowering stage	20.368
SRP132670	SRR6706286	Control	19.518
	SRR6706287	Light intensity 50%	19.414
	SRR6706288	Light intensity 20%	21.453
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.067
	CNS0095593	Slightly white alabastrum(diploid) 2	15.189
	CNS0095594	Slightly white alabastrum(diploid) 3	15.391
	CNS0095595	Whole white alabastrum(diploid) 2	15.085
	CNS0095596	Whole white alabastrum(diploid) 3	13.653
	CNS0095597	Whole white alabastrum(diploid) 4	13.643
	CNS0095598	Silvery flower (diploied) 1	32.350
	CNS0095599	Silvery flower (diploied) 2	28.338
	CNS0095600	Silvery flower (diploied) 3	23.348
	CNS0095601	Golden flower (diploid) 1	40.839
	CNS0095602	Golden flower (diploid) 2	28.730
	CNS0095603	Golden flower (diploid) 3	28.351
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.795
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.855
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.298
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.806
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.033
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.766
	CNS0095610	Silvery flower (tetraploid) 1	17.073
	CNS0095611	Silvery flower (tetraploid) 2	24.868
	CNS0095612	Silvery flower (tetraploid) 3	17.842
	CNS0095613	Golden flower (tetraploid) 1	17.423
	CNS0095614	Golden flower (tetraploid) 2	17.681
	CNS0095615	Golden flower (tetraploid) 3	10.615
CRA001975	CRR073297	Stem 1	22.965
	CRR073298	Stem 2	18.079
	CRR073299	Stem 3	21.841
	CRR073300	Leaf 1	17.631
	CRR073301	Leaf 2	15.024
	CRR073302	Leaf 3	17.957
	CRR073303	Juvenile bud 1	18.366
	CRR073304	Juvenile bud 2	15.031
	CRR073305	Juvenile bud 3	19.343
	CRR073306	Third green 1	3.134
	CRR073307	Third green 2	2.651
	CRR073308	Third green 3	4.032
	CRR073309	Second white 1	7.340
	CRR073310	Second white 2	5.973
	CRR073311	Second white 3	3.277
	CRR073312	Silver flowering 1	2.279
	CRR073313	Silver flowering 2	5.356
	CRR073314	Silver flowering 3	4.038
	CRR073315	Gold flowering 1	85.460
	CRR073316	Gold flowering 2	89.268
	CRR073317	Gold flowering 3	65.763
	CRR073318	Tawny withering 1	21.022
	CRR073319	Tawny withering 2	19.714
	CRR073320	Tawny withering 3	21.641