Gene detail

Detail information of GWHGAAZE016706

Functional Annotation

Database	Orthologs	Annotation
Nr	AAV54051.1	3-hydroxy-3-methylglutaryl coenzyme A reductase [Eucommia ulmoides]
Swissprot	tr\|P29057\|HMDH1_HEVBR	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
trEMBL	tr\|Q5RZ62\|Q5RZ62_EUCUL	3-hydroxy-3-methylglutaryl coenzyme A reductase {ECO:0000256\|RuleBase:RU361219}
TAIR10	AT1G76490.1	hydroxy methylglutaryl CoA reductase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	81260092	81264036	+
GWHAAZE00000004	mRNA	81260092	81264036	+
GWHAAZE00000004	exon	81260092	81261053	+
GWHAAZE00000004	exon	81261965	81262146	+
GWHAAZE00000004	exon	81262874	81263187	+
GWHAAZE00000004	exon	81263791	81264036	+
GWHAAZE00000004	CDS	81260092	81261053	+
GWHAAZE00000004	CDS	81261965	81262146	+
GWHAAZE00000004	CDS	81262874	81263187	+
GWHAAZE00000004	CDS	81263791	81264036	+

Transcript Sequence
>GWHTAAZE016726 ATGGACGTCCGCCGGAGACCTCCCAAGTCTCTCCGTCCCACCAACAAACCAACATCTTCATCCGCCGGGGTTGGCGTTGTGGTTGATCCTCCTCCTCCTCCTCCTCCTCCTCCACCATCATCACCCAAGGCATCGGATGCACTGCCCTTACCACTATACCTAACAAACGGCATTTTCTTCACCCTCTTCTTCTCCGTCGCCTACTACCTCCTCCACCGCTGGCGCGATAAGATCCGAAACTCCACCCCTCTCCACGTCGTCACCCTTTCCGAACTCACAGCCATTGTTTCCCTCATTGCTTCCTTCATCTACCTCCTCGGCTTCTTCGGCATCGACTTCGTCCAATCCTTCGTTGCACGCTCCTCTCACGAGGACGACGACTCCCCCTGGGACCAGCACCATCAAGATGACCACCGCTTCAACTGCCCCGTCACCACCGCCCCCGCCATTGCCCCGGTTCCCAAGGTTATTATGGACGACGCGGAGGACGAATCCATTGTACAATCCGTTGTATCAGGATCGACTCCGTCTTACTCGCTCGAATCGAAACTCGGAGACTGCTTTCGGGCCGCCTCGATTCGTCGAGAGGCGGTGCAAAGGATTACGGGGAGGTCCATTGTTGGTTTGCCATTGGATGGATTTGATTACAATTCCATTTTGGGACAGTGCTGCGAGATGCCGGTGGGGTATGTACAAATACCGGTGGGGATTGCAGGTCCATTGTTGCTCAATGGATGCGAGTACTCGGTGCCTATGGCCACCACGGAAGGGTGTTTGGTCGCGAGTACTAACAGAGGCTGCAAGGCGATATACGCGTCCGGTGGGGCCACTGGGATTCTCTTGAGGGATGGGATGACGAGAGCGCCGGTTGTTAGGTTTCCGACGGCAAAAAGAGCTTCGGATTTAAAATTCTTCTTGGAAGACCCTCTTAATTTCGATACATTATCCCTAGTTTTCAATCGGTCAAGCAGATTTGCAAGGGTCCAAAGCATTAGATGCGCAATTGCAGGGAGAAATTTATACATGAGATTTACTTGTAGCACAGGTGATGCAATGGGGATGAACATGGTGTCCAAGGGTGTGCAGAATGTGTTGGAGTTCCTTCAAACTGATTTCCCAGATATGGATGTCATTGGTATCTCTGTGAATTGGATTGAAGGGAGGGGAAAGTCAGTAGTGTGTGAGGCAACCATCACAGAGGAAGTGGTGAAGAAGGTACTGAAAACAACTGTAGGAGCCCTGGTAGAGCTGAACATGCTTAAGAACCTAGCTGGTTCTGCTGTTGCTGGAGCTCTTGGTGGCTTCAATGCCCATGCTGCCAATATTGTCTCCGCTGTTTTTATAGCCACTGGGCAGGATCCTGCTCAAAATATTGAAAGTTCTCACTGCATTACTATGATGGAGGCTATCAATGATGGCAAGGATCTTCATGTCTCTGTCACCATGCCTTCCATTGAGGTTGGTACGGTAGGAGGGGGGACTCAACTTGCATCACAATCGGCTTGCCTGAACCTGCTTGGAGTTAAGGGTGCAAGCAAAGAGTTGCCGGGGTCGAACTCAAGGCTCTTGGCCACCATAGTAGCCGGTTCAGTTTTAGCAGGGGAGCTGTCCTTAATGTCTGCAATTGCAGCAGGGCAGCTTGTGAAGAGCCACATGAAGTACAACAGGTCTAGCAAGGATGTGTCCAAGATTACAAGTACTTAA

Network for GWHGAAZE016706

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00368.19	HMG-CoA_red	191	556	1.80E-127

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00021	HMGCR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Terpenoid backbone biosynthesis	map00900
		AMPK signaling pathway	map04152
		Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0015936	biological_process	coenzyme A metabolic process
GO:0008299	biological_process	isoprenoid biosynthetic process
GO:0004420	molecular_function	hydroxymethylglutaryl-CoA reductase (NADPH) activity
GO:0050662	molecular_function	coenzyme binding
GO:0016616	molecular_function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	109.131
	SRR3591706	second leaf	46.642
	SRR3591707	mature leaf	18.004
	SRR3591708	Shoot apex	64.363
	SRR3591709	Stem	38.854
	SRR3591710	White floral bud	105.218
	SRR3591711	White flower	10.899
	SRR3591712	Green floral bud	118.665
	SRR3591713	Yellow flower	5.784
SRP173429	SRR8316895	Juvenile bud stage	36.624
	SRR8316896	Juvenile bud stage	60.690
	SRR8316897	Juvenile bud stage	28.480
	SRR8316894	Third green stage	34.606
	SRR8316900	Third green stage	106.054
	SRR8316901	Third green stage	112.899
	SRR8316898	Complete white stage	11.781
	SRR8316899	Complete white stage	87.364
	SRR8316903	Complete white stage	22.965
	SRR8316902	Silver flowering stage	4.141
	SRR8316904	Silver flowering stage	7.290
	SRR8316905	Silver flowering stage	3.425
	SRR8316906	Gold flowering stage	4.292
	SRR8316907	Gold flowering stage	4.403
	SRR8316908	Gold flowering stage	3.926
SRP132670	SRR6706286	Control	125.277
	SRR6706287	Light intensity 50%	140.045
	SRR6706288	Light intensity 20%	139.471
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	56.055
	CNS0095593	Slightly white alabastrum(diploid) 2	74.818
	CNS0095594	Slightly white alabastrum(diploid) 3	53.078
	CNS0095595	Whole white alabastrum(diploid) 2	85.792
	CNS0095596	Whole white alabastrum(diploid) 3	94.958
	CNS0095597	Whole white alabastrum(diploid) 4	114.517
	CNS0095598	Silvery flower (diploied) 1	22.617
	CNS0095599	Silvery flower (diploied) 2	37.790
	CNS0095600	Silvery flower (diploied) 3	13.772
	CNS0095601	Golden flower (diploid) 1	17.848
	CNS0095602	Golden flower (diploid) 2	14.032
	CNS0095603	Golden flower (diploid) 3	14.049
	CNS0095604	Slightly white alabastrum(tetraploid) 1	109.468
	CNS0095605	Slightly white alabastrum(tetraploid) 2	95.749
	CNS0095606	Slightly white alabastrum(tetraploid) 3	153.214
	CNS0095607	Whole white alabastrum(tetraploid) 1	129.048
	CNS0095608	Whole white alabastrum(tetraploid) 2	157.822
	CNS0095609	Whole white alabastrum(tetraploid) 3	152.535
	CNS0095610	Silvery flower (tetraploid) 1	7.823
	CNS0095611	Silvery flower (tetraploid) 2	17.439
	CNS0095612	Silvery flower (tetraploid) 3	33.685
	CNS0095613	Golden flower (tetraploid) 1	4.524
	CNS0095614	Golden flower (tetraploid) 2	5.354
	CNS0095615	Golden flower (tetraploid) 3	14.089
CRA001975	CRR073297	Stem 1	143.376
	CRR073298	Stem 2	158.623
	CRR073299	Stem 3	156.991
	CRR073300	Leaf 1	273.209
	CRR073301	Leaf 2	260.732
	CRR073302	Leaf 3	218.398
	CRR073303	Juvenile bud 1	239.472
	CRR073304	Juvenile bud 2	216.164
	CRR073305	Juvenile bud 3	298.041
	CRR073306	Third green 1	47.903
	CRR073307	Third green 2	62.788
	CRR073308	Third green 3	51.851
	CRR073309	Second white 1	5.056
	CRR073310	Second white 2	8.444
	CRR073311	Second white 3	9.149
	CRR073312	Silver flowering 1	29.654
	CRR073313	Silver flowering 2	38.917
	CRR073314	Silver flowering 3	21.941
	CRR073315	Gold flowering 1	34.441
	CRR073316	Gold flowering 2	23.141
	CRR073317	Gold flowering 3	27.123
	CRR073318	Tawny withering 1	115.521
	CRR073319	Tawny withering 2	76.935
	CRR073320	Tawny withering 3	111.891