Detail information of GWHGAAZE016677


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010663985.10PREDICTED: Fanconi anemia group J protein homolog isoform X1 [Vitis vinifera]
Swissprottr|Q8W4M7|ERCC2_ARATH5E-16DNA repair helicase UVH6
trEMBLtr|F6I6T9|F6I6T9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB62657.1}
TAIR10AT1G20720.10RAD3-like DNA-binding helicase protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8083064180845197-
GWHAAZE00000004mRNA8083064180845197-
GWHAAZE00000004exon8084481380845197-
GWHAAZE00000004exon8084411980844197-
GWHAAZE00000004exon8084357680843651-
GWHAAZE00000004exon8084214480842286-
GWHAAZE00000004exon8084191880842018-
GWHAAZE00000004exon8084101980841160-
GWHAAZE00000004exon8084052480840585-
GWHAAZE00000004exon8084037080840443-
GWHAAZE00000004exon8084021280840282-
GWHAAZE00000004exon8083944980839536-
GWHAAZE00000004exon8083924180839313-
GWHAAZE00000004exon8083904180839151-
GWHAAZE00000004exon8083823680838344-
GWHAAZE00000004exon8083761980837712-
GWHAAZE00000004exon8083743480837517-
GWHAAZE00000004exon8083718480837340-
GWHAAZE00000004exon8083675280836930-
GWHAAZE00000004exon8083429780834325-
GWHAAZE00000004exon8083407180834192-
GWHAAZE00000004exon8083365880833705-
GWHAAZE00000004exon8083292980833053-
GWHAAZE00000004exon8083250780832829-
GWHAAZE00000004exon8083064180831577-
GWHAAZE00000004CDS8084481380845197-
GWHAAZE00000004CDS8084411980844197-
GWHAAZE00000004CDS8084357680843651-
GWHAAZE00000004CDS8084214480842286-
GWHAAZE00000004CDS8084191880842018-
GWHAAZE00000004CDS8084101980841160-
GWHAAZE00000004CDS8084052480840585-
GWHAAZE00000004CDS8084037080840443-
GWHAAZE00000004CDS8084021280840282-
GWHAAZE00000004CDS8083944980839536-
GWHAAZE00000004CDS8083924180839313-
GWHAAZE00000004CDS8083904180839151-
GWHAAZE00000004CDS8083823680838344-
GWHAAZE00000004CDS8083761980837712-
GWHAAZE00000004CDS8083743480837517-
GWHAAZE00000004CDS8083718480837340-
GWHAAZE00000004CDS8083675280836930-
GWHAAZE00000004CDS8083429780834325-
GWHAAZE00000004CDS8083407180834192-
GWHAAZE00000004CDS8083365880833705-
GWHAAZE00000004CDS8083292980833053-
GWHAAZE00000004CDS8083250780832829-
GWHAAZE00000004CDS8083064180831577-
Transcript Sequence

Network for GWHGAAZE016677

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06733.16DEAD_21533271.60E-40
PF13307.7Helicase_C_25717614.10E-45
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K15362BRIP1, BACH1, FANCJ Homologous recombination map03440
Fanconi anemia pathwaymap03460

Gene Ontology

GO term OntologyName
GO:0006139biological_processnucleobase-containing compound metabolic process
GO:0003676molecular_functionnucleic acid binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0016818molecular_functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.948
SRR3591706second leaf1.007
SRR3591707mature leaf1.486
SRR3591708Shoot apex7.686
SRR3591709Stem1.675
SRR3591710White floral bud1.828
SRR3591711White flower1.714
SRR3591712Green floral bud2.412
SRR3591713Yellow flower1.276
SRP173429 SRR8316895Juvenile bud stage 2.013
SRR8316896Juvenile bud stage 2.188
SRR8316897Juvenile bud stage 1.209
SRR8316894Third green stage 0.783
SRR8316900Third green stage 1.191
SRR8316901Third green stage 1.385
SRR8316898Complete white stage 0.154
SRR8316899Complete white stage 0.875
SRR8316903Complete white stage 0.515
SRR8316902Silver flowering stage0.419
SRR8316904Silver flowering stage0.760
SRR8316905Silver flowering stage0.419
SRR8316906Gold flowering stage 0.836
SRR8316907Gold flowering stage 0.760
SRR8316908Gold flowering stage 1.156
SRP132670SRR6706286Control0.677
SRR6706287Light intensity 50%0.828
SRR6706288Light intensity 20%0.828
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.716
CNS0095593Slightly white alabastrum(diploid) 21.062
CNS0095594Slightly white alabastrum(diploid) 30.479
CNS0095595Whole white alabastrum(diploid) 20.701
CNS0095596Whole white alabastrum(diploid) 30.281
CNS0095597Whole white alabastrum(diploid) 40.481
CNS0095598Silvery flower (diploied) 11.023
CNS0095599Silvery flower (diploied) 20.826
CNS0095600Silvery flower (diploied) 31.225
CNS0095601Golden flower (diploid) 10.746
CNS0095602Golden flower (diploid) 20.955
CNS0095603Golden flower (diploid) 30.754
CNS0095604Slightly white alabastrum(tetraploid) 11.469
CNS0095605Slightly white alabastrum(tetraploid) 20.350
CNS0095606Slightly white alabastrum(tetraploid) 32.993
CNS0095607Whole white alabastrum(tetraploid) 10.770
CNS0095608Whole white alabastrum(tetraploid) 20.266
CNS0095609Whole white alabastrum(tetraploid) 30.909
CNS0095610Silvery flower (tetraploid) 11.834
CNS0095611Silvery flower (tetraploid) 21.207
CNS0095612Silvery flower (tetraploid) 31.872
CNS0095613Golden flower (tetraploid) 10.444
CNS0095614Golden flower (tetraploid) 20.985
CNS0095615Golden flower (tetraploid) 30.845
CRA001975CRR073297Stem 12.043
CRR073298Stem 21.352
CRR073299Stem 31.300
CRR073300Leaf 11.020
CRR073301Leaf 20.580
CRR073302Leaf 30.411
CRR073303Juvenile bud 10.700
CRR073304Juvenile bud 20.178
CRR073305Juvenile bud 30.746
CRR073306Third green 10.069
CRR073307Third green 20.085
CRR073308Third green 30.086
CRR073309Second white 10.320
CRR073310Second white 20.300
CRR073311Second white 30.403
CRR073312Silver flowering 10.340
CRR073313Silver flowering 20.423
CRR073314Silver flowering 30.084
CRR073315Gold flowering 10.203
CRR073316Gold flowering 20.522
CRR073317Gold flowering 30.151
CRR073318Tawny withering 11.613
CRR073319Tawny withering 20.707
CRR073320Tawny withering 31.380