Gene detail

Detail information of GWHGAAZE016676

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011077244.1	0	PREDICTED: 12-oxophytodienoate reductase 1-like [Sesamum indicum]
Swissprot	tr\|B9FSC8\|OPR11_ORYSJ	0	Putative 12-oxophytodienoate reductase 11
trEMBL	tr\|A0A061FLC8\|A0A061FLC8_THECC	0	12-oxophytodienoate reductase 2 isoform 1 {ECO:0000313\|EMBL:EOY15294.1}
TAIR10	AT1G76690.1	6E-152	12-oxophytodienoate reductase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80806711	80810289	-
GWHAAZE00000004	mRNA	80806711	80810289	-
GWHAAZE00000004	exon	80806711	80807336	-
GWHAAZE00000004	exon	80807628	80807798	-
GWHAAZE00000004	exon	80807890	80808020	-
GWHAAZE00000004	exon	80808279	80808419	-
GWHAAZE00000004	exon	80810198	80810289	-
GWHAAZE00000004	CDS	80810198	80810289	-
GWHAAZE00000004	CDS	80808279	80808419	-
GWHAAZE00000004	CDS	80807890	80808020	-
GWHAAZE00000004	CDS	80807628	80807798	-
GWHAAZE00000004	CDS	80806711	80807336	-

Transcript Sequence
>GWHTAAZE016696 ATGGAAGAGGAGAGGAAAGAAGCTGAGACTGAGAGGGCGGTCATTCCCCTCCTAATTCCCTACAAGATGGGAAACTTTCATCTTTCTCACAGGATAGTTTTGGCCCCATTAGGAAGACTGAGATCTTATAATTTCACAGCGCAACCACATGCCATTCTTTATTACTCCCAAAGAACCACACAGGGTGGCTTTTTGATTGGAGAAGCCTCTGGCATTTCAGATACTGCTCAAGGCTACCCAAATACGCCCGGCATCTGGACAAAAGAGCAAACAGAAGCATGGAGGCCAATTGTAAATGCTGTTCATGAGAAAGGAGGCATATTCTTCTGCCAACTTTGGCATGCTGGGAGAGTGTCAAACTATAGTTATCAACCTAACGGTCAGGCTCCAATCTCTTGCACTCACAACCAAATTAAAGGTGATGTTAGCTTGGGTGAAGCTGCAACCTTTTCACCTCCACGACGGTTAACCATTCAAGAAATCGCTCAAGTTGTTGATGACTTCAGAGTTGCAGCCAGAAATGCAATTGAAGCCGATGGAGAAACTGATGAAGTTGAAGTTGCAGGTTTTGATGGAGTAGAGATTCATGGAGCAAATGGATACCTAATCGACCAATTCCTAAAGGACCAAGTAAACGATAGAACAGACGAATATGGCGGGACCCTGGAGAAGCGTTGTCGCTTTGCTCTAGAAGTAGTTGAAGCAGTGGCAAATGAGATTGGAGCTGATAAAGTTGGAATTAGACTCTCTCCTTTTGCCGATTACAATGACTGTGGAGATTCAAACCCAGAAGCTCTCGGCCTTTACTTGGCCGAATCCTTGAACAAATACAAAATACTATATTGCCATGTGATTGAGCCGAGGATGGTGACGGTGTTTGATAAGCAGGAGACTAAAAACAGCCTACTGCCCATGAGAAAAGCTTTCAGAGGGACTTTTGTTGTTGCTGGTGGGTACAATAGGAATGATGGGAGTAAAGTTATTAGCAATAATGGTGCTGATCTAGTTGCGTTTGGACGCTTGTTCTTGGCTAACCCGGATTTGCCTAGGAGATTTGAGCTTGATGCTTGTCTCAATAAGTGTGATAGAAGCATGTTTTATACAACTGACCCTGTGGTTGGGTACACAGATTACCCATTTCTTGATGAGTCCAGTACGTAG

Network for GWHGAAZE016676

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00724.21	Oxidored_FMN	17	353	1.10E-80

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05894	OPR	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0010181	molecular_function	FMN binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.283
	SRR3591707	mature leaf	0.152
	SRR3591708	Shoot apex	0.261
	SRR3591709	Stem	0.337
	SRR3591710	White floral bud	0.659
	SRR3591711	White flower	0.679
	SRR3591712	Green floral bud	0.241
	SRR3591713	Yellow flower	0.137
SRP173429	SRR8316895	Juvenile bud stage	0.400
	SRR8316896	Juvenile bud stage	0.485
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.222
	SRR8316900	Third green stage	0.212
	SRR8316901	Third green stage	0.605
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.171
	SRR8316903	Complete white stage	0.328
	SRR8316902	Silver flowering stage	0.115
	SRR8316904	Silver flowering stage	0.044
	SRR8316905	Silver flowering stage	0.040
	SRR8316906	Gold flowering stage	0.419
	SRR8316907	Gold flowering stage	0.413
	SRR8316908	Gold flowering stage	1.581
SRP132670	SRR6706286	Control	0.240
	SRR6706287	Light intensity 50%	0.198
	SRR6706288	Light intensity 20%	0.152
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.696
	CNS0095593	Slightly white alabastrum(diploid) 2	1.107
	CNS0095594	Slightly white alabastrum(diploid) 3	1.526
	CNS0095595	Whole white alabastrum(diploid) 2	3.214
	CNS0095596	Whole white alabastrum(diploid) 3	0.070
	CNS0095597	Whole white alabastrum(diploid) 4	1.007
	CNS0095598	Silvery flower (diploied) 1	0.791
	CNS0095599	Silvery flower (diploied) 2	0.603
	CNS0095600	Silvery flower (diploied) 3	0.397
	CNS0095601	Golden flower (diploid) 1	0.762
	CNS0095602	Golden flower (diploid) 2	0.064
	CNS0095603	Golden flower (diploid) 3	0.370
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.554
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.875
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.439
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.561
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.146
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.102
	CNS0095610	Silvery flower (tetraploid) 1	0.088
	CNS0095611	Silvery flower (tetraploid) 2	0.064
	CNS0095612	Silvery flower (tetraploid) 3	0.386
	CNS0095613	Golden flower (tetraploid) 1	0.506
	CNS0095614	Golden flower (tetraploid) 2	0.096
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.631
	CRR073298	Stem 2	0.149
	CRR073299	Stem 3	0.432
	CRR073300	Leaf 1	0.044
	CRR073301	Leaf 2	0.166
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.006
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.009
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.209
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.023
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.701
	CRR073316	Gold flowering 2	0.518
	CRR073317	Gold flowering 3	0.011
	CRR073318	Tawny withering 1	0.568
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000