Gene detail

Detail information of GWHGAAZE016648

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010266065.1	0	PREDICTED: serine/threonine-protein kinase EDR1-like [Nelumbo nucifera]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	2E-58	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A061DXP1\|A0A061DXP1_THECC	0	ACT-like protein tyrosine kinase family protein isoform 1 {ECO:0000313\|EMBL:EOX97554.1}
TAIR10	AT4G38470.1	4E-171	ACT-like protein tyrosine kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	80223070	80231216	+
GWHAAZE00000004	mRNA	80223070	80231216	+
GWHAAZE00000004	exon	80223070	80223454	+
GWHAAZE00000004	exon	80224856	80224970	+
GWHAAZE00000004	exon	80225451	80225671	+
GWHAAZE00000004	exon	80225812	80225845	+
GWHAAZE00000004	exon	80226659	80226733	+
GWHAAZE00000004	exon	80227356	80227371	+
GWHAAZE00000004	exon	80227490	80227641	+
GWHAAZE00000004	exon	80228965	80229015	+
GWHAAZE00000004	exon	80229130	80229308	+
GWHAAZE00000004	exon	80229412	80229519	+
GWHAAZE00000004	exon	80229611	80229684	+
GWHAAZE00000004	exon	80229840	80230015	+
GWHAAZE00000004	exon	80230716	80230796	+
GWHAAZE00000004	exon	80230911	80230964	+
GWHAAZE00000004	exon	80231076	80231216	+
GWHAAZE00000004	five_prime_UTR	80223070	80223263	+
GWHAAZE00000004	CDS	80223264	80223454	+
GWHAAZE00000004	CDS	80224856	80224970	+
GWHAAZE00000004	CDS	80225451	80225671	+
GWHAAZE00000004	CDS	80225812	80225845	+
GWHAAZE00000004	CDS	80226659	80226733	+
GWHAAZE00000004	CDS	80227356	80227371	+
GWHAAZE00000004	CDS	80227490	80227641	+
GWHAAZE00000004	CDS	80228965	80229015	+
GWHAAZE00000004	CDS	80229130	80229308	+
GWHAAZE00000004	CDS	80229412	80229519	+
GWHAAZE00000004	CDS	80229611	80229684	+
GWHAAZE00000004	CDS	80229840	80230015	+
GWHAAZE00000004	CDS	80230716	80230796	+
GWHAAZE00000004	CDS	80230911	80230964	+
GWHAAZE00000004	CDS	80231076	80231216	+

Transcript Sequence
>GWHTAAZE016668 GGGGTGCGCATTACGCCAATTCACGTTCGACCAAATTTCACCTCTTCACAGAATGATCCAATTTTTGTGTTCCTAATCTACTTTGCTCTGTATTTTGTGAGTGATCGTGTTTTGTTTGGAATTTGTATCAATTTTTTTTTTTTTTAATCAAGTTTTAGTTGTGGGGATTGGATTGTTCCATGTAAAAAATTGTGATGGGAGATACTGAGAGTTGTGCGAGTAGAGCGAATTGGGAGTCATTGCCGGCGCAAACACGGAAGAGGAGACAGAAGGTAGAGGTTTATGAGGAGGTCCTTCGTAGGCTAAAAGAATCGAATGATGAGGAGGCGAGTCAACCTGGTTTTGATGATGAGCTTTGGTCTCATTTCAATCGTCTTCCTGTTAGGTATGCATTGGATGTGAATGTTGAGAGAGCACAAGATGTTCTTCTGCATAAGAAATTATTGCATATGGCACATAACCCTACTACCAGAACTGCATTTGAAGTTCGCCTTGTGCAGGATGAGGCAAGATATACGAATACTGAACTTTTATCTCTTCTTCAAAGTATTGTCATATCATCATACCTTATAATTTTTTTATTTTTCCTCTCTTCGATTTCCAGCATTCATCCGCCACCTGCCTTTGGTTTGTCATCAACTCTTGAACTTGCACTTGAAGCCAATAAAGCGCATGTTCAAGATGGAAGCAGTTCTATGAGTGCCAATCTGCACTTATTTCGTTTTCAACATTTACATTCAGGTTATATTGATCTTTGTAATATTTCCAAATGCAGGCCTTTGCATGAAATAACAATTTCAACAAATGACAAGCCAAAACTCCTCAGCCAGACTAGTCTTTATTCAATACTTGAGGCTTCTCAAAATTCCTTTGTGTTAAATTTCCAGTTGACCTCCTTACTGTCTGAGATTGGATTGAACATTCAAGAAGCCCATGCTTTTTCTACAACTGATGGTTACTCCTTGGATGTCTTTGTTGTTGATGGCTGGGAATATGAGGAAACCGAGAAGCTTAGAAATGCACTGGCAAAGGAAATTCCAAAGATTGAGCAGAATCAGTCTTTTTCAACACAATGTTTTATATCTCGTGCTGAGGAGTTTGGGCAGTCCAGGTTCAAGCTTGTTCCGAACCATTTAAACATACCAGTGGATGCAATTGATGTCTGGGAAATTGATGCCACACTGTTGAATTTTGAACACAAAATTGCTGCTGGATCATATGTCAATTTATATAAAGGTACCTTTCGGAGTCAGGATGTGGCTATCAAGGTTCTCAAGGGTGAGTATCTCAACGAAGACGTGCAGAGGGAATTTGCTCAAGAAGTCTACATTTTAAGGAAAGTTCGACACAAGAATGTTGTTCAATTTATTGGTGCATGCACAAGACCTCCAAGCCTATGTATTGTGACTGAATTTATGTCCCGTGGAAGTGTGTATGACTTTTTGCATAAGCAGAAAGGCTTTTTCAAGCTCCCAGCCATACTCAAAGTAGCAAGTGATGTTTCGAAAGGAATGAACTATTTGCACCAAAATAATATAATACACAGGGACCTAAAGGCTGCCAATCTTTTGATGGATGAAAATGAAGTTATTGAACACAGACCCTATGATCACAAGGCTGACGTTTTCAGCTTCGGAATTGTATTATGGGAGCTTCTAACTGGGAAGCTTCCTTATGAGCAATTGACCCCACTACAGGCAGCATTGGGAGTAGTTCAACAGGGTTTGAGGCCTACAATACCGACGCCTACACATCCAGACATTGTGGAGTTGCTTGAGAGATGTTGGCAGAAGGATCCGTCGTTGAGGCCAGAATTTTCTGAAATAATTGGCTTCTTGCACCACATATCCCAAAAGGTATAA

Network for GWHGAAZE016648

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	331	466	1.80E-34

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.887
	SRR3591706	second leaf	2.057
	SRR3591707	mature leaf	5.180
	SRR3591708	Shoot apex	2.442
	SRR3591709	Stem	5.047
	SRR3591710	White floral bud	1.860
	SRR3591711	White flower	1.805
	SRR3591712	Green floral bud	0.983
	SRR3591713	Yellow flower	1.143
SRP173429	SRR8316895	Juvenile bud stage	2.686
	SRR8316896	Juvenile bud stage	2.680
	SRR8316897	Juvenile bud stage	1.537
	SRR8316894	Third green stage	1.371
	SRR8316900	Third green stage	3.872
	SRR8316901	Third green stage	2.594
	SRR8316898	Complete white stage	0.838
	SRR8316899	Complete white stage	4.420
	SRR8316903	Complete white stage	1.467
	SRR8316902	Silver flowering stage	0.324
	SRR8316904	Silver flowering stage	0.557
	SRR8316905	Silver flowering stage	0.213
	SRR8316906	Gold flowering stage	0.877
	SRR8316907	Gold flowering stage	0.624
	SRR8316908	Gold flowering stage	0.833
SRP132670	SRR6706286	Control	2.457
	SRR6706287	Light intensity 50%	2.442
	SRR6706288	Light intensity 20%	2.520
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.191
	CNS0095593	Slightly white alabastrum(diploid) 2	2.327
	CNS0095594	Slightly white alabastrum(diploid) 3	2.400
	CNS0095595	Whole white alabastrum(diploid) 2	1.262
	CNS0095596	Whole white alabastrum(diploid) 3	0.647
	CNS0095597	Whole white alabastrum(diploid) 4	1.316
	CNS0095598	Silvery flower (diploied) 1	3.909
	CNS0095599	Silvery flower (diploied) 2	2.753
	CNS0095600	Silvery flower (diploied) 3	1.669
	CNS0095601	Golden flower (diploid) 1	3.112
	CNS0095602	Golden flower (diploid) 2	2.748
	CNS0095603	Golden flower (diploid) 3	2.494
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.301
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.792
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.489
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.366
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.735
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.348
	CNS0095610	Silvery flower (tetraploid) 1	1.584
	CNS0095611	Silvery flower (tetraploid) 2	1.843
	CNS0095612	Silvery flower (tetraploid) 3	0.504
	CNS0095613	Golden flower (tetraploid) 1	0.946
	CNS0095614	Golden flower (tetraploid) 2	1.478
	CNS0095615	Golden flower (tetraploid) 3	0.675
CRA001975	CRR073297	Stem 1	2.829
	CRR073298	Stem 2	3.163
	CRR073299	Stem 3	1.801
	CRR073300	Leaf 1	2.705
	CRR073301	Leaf 2	1.685
	CRR073302	Leaf 3	1.166
	CRR073303	Juvenile bud 1	1.077
	CRR073304	Juvenile bud 2	0.428
	CRR073305	Juvenile bud 3	2.179
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.069
	CRR073308	Third green 3	0.065
	CRR073309	Second white 1	0.170
	CRR073310	Second white 2	0.019
	CRR073311	Second white 3	0.170
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.029
	CRR073314	Silver flowering 3	0.149
	CRR073315	Gold flowering 1	3.717
	CRR073316	Gold flowering 2	4.504
	CRR073317	Gold flowering 3	1.235
	CRR073318	Tawny withering 1	2.239
	CRR073319	Tawny withering 2	4.283
	CRR073320	Tawny withering 3	1.990