Detail information of GWHGAAZE016646


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002510603.11.30137E-81Plastocyanin A, chloroplast precursor, putative [Ricinus communis]
Swissprottr|P17340|PLAS_SOLLC8E-84Plastocyanin, chloroplastic (Precursor)
trEMBLtr|B9R8G0|B9R8G0_RICCO5E-82Plastocyanin A, chloroplast, putative {ECO:0000313|EMBL:EEF52790.1}
TAIR10AT1G20340.11E-52Cupredoxin superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8019389280194392-
GWHAAZE00000004mRNA8019389280194392-
GWHAAZE00000004exon8019389280194392-
GWHAAZE00000004CDS8019389280194392-
Transcript Sequence

Network for GWHGAAZE016646

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00127.21Copper-bind691651.20E-35
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02638petE Photosynthesis map00195

Gene Ontology

GO term OntologyName
GO:0005507molecular_functioncopper ion binding
GO:0009055molecular_functionelectron transfer activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf138.384
SRR3591706second leaf427.246
SRR3591707mature leaf180.904
SRR3591708Shoot apex139.902
SRR3591709Stem85.617
SRR3591710White floral bud26.165
SRR3591711White flower24.490
SRR3591712Green floral bud14.429
SRR3591713Yellow flower7.873
SRP173429 SRR8316895Juvenile bud stage 77.146
SRR8316896Juvenile bud stage 72.818
SRR8316897Juvenile bud stage 23.875
SRR8316894Third green stage 26.442
SRR8316900Third green stage 65.588
SRR8316901Third green stage 47.246
SRR8316898Complete white stage 27.347
SRR8316899Complete white stage 39.682
SRR8316903Complete white stage 35.462
SRR8316902Silver flowering stage9.102
SRR8316904Silver flowering stage13.583
SRR8316905Silver flowering stage8.614
SRR8316906Gold flowering stage 11.610
SRR8316907Gold flowering stage 13.913
SRR8316908Gold flowering stage 14.567
SRP132670SRR6706286Control80.431
SRR6706287Light intensity 50%59.712
SRR6706288Light intensity 20%53.903
CNP0000432CNS0095592Slightly white alabastrum(diploid) 186.743
CNS0095593Slightly white alabastrum(diploid) 265.280
CNS0095594Slightly white alabastrum(diploid) 353.474
CNS0095595Whole white alabastrum(diploid) 247.328
CNS0095596Whole white alabastrum(diploid) 360.721
CNS0095597Whole white alabastrum(diploid) 441.895
CNS0095598Silvery flower (diploied) 197.048
CNS0095599Silvery flower (diploied) 2123.546
CNS0095600Silvery flower (diploied) 3112.922
CNS0095601Golden flower (diploid) 192.270
CNS0095602Golden flower (diploid) 285.974
CNS0095603Golden flower (diploid) 389.967
CNS0095604Slightly white alabastrum(tetraploid) 155.158
CNS0095605Slightly white alabastrum(tetraploid) 257.985
CNS0095606Slightly white alabastrum(tetraploid) 370.410
CNS0095607Whole white alabastrum(tetraploid) 124.119
CNS0095608Whole white alabastrum(tetraploid) 226.285
CNS0095609Whole white alabastrum(tetraploid) 338.479
CNS0095610Silvery flower (tetraploid) 160.687
CNS0095611Silvery flower (tetraploid) 2138.785
CNS0095612Silvery flower (tetraploid) 395.493
CNS0095613Golden flower (tetraploid) 136.506
CNS0095614Golden flower (tetraploid) 243.109
CNS0095615Golden flower (tetraploid) 328.276
CRA001975CRR073297Stem 1118.027
CRR073298Stem 2110.246
CRR073299Stem 3167.326
CRR073300Leaf 125.958
CRR073301Leaf 235.926
CRR073302Leaf 348.842
CRR073303Juvenile bud 124.301
CRR073304Juvenile bud 232.497
CRR073305Juvenile bud 334.271
CRR073306Third green 131.467
CRR073307Third green 237.700
CRR073308Third green 336.056
CRR073309Second white 139.420
CRR073310Second white 213.552
CRR073311Second white 36.903
CRR073312Silver flowering 17.320
CRR073313Silver flowering 26.646
CRR073314Silver flowering 34.499
CRR073315Gold flowering 1310.639
CRR073316Gold flowering 2286.016
CRR073317Gold flowering 3379.442
CRR073318Tawny withering 168.966
CRR073319Tawny withering 260.643
CRR073320Tawny withering 357.060