Detail information of GWHGAAZE016643


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010266907.10PREDICTED: DNA-directed RNA polymerase II subunit 1 [Nelumbo nucifera]
Swissprottr|P18616|NRPB1_ARATH0DNA-directed RNA polymerase II subunit 1
trEMBLtr|F6H0D9|F6H0D9_VITVI0DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}
TAIR10AT4G35800.10RNA polymerase II large subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene8015269380161899+
GWHAAZE00000004mRNA8015269380161899+
GWHAAZE00000004exon8015269380153013+
GWHAAZE00000004exon8015360380153866+
GWHAAZE00000004exon8015494580155244+
GWHAAZE00000004exon8015535180155443+
GWHAAZE00000004exon8015582780155988+
GWHAAZE00000004exon8015606380156283+
GWHAAZE00000004exon8015637680156556+
GWHAAZE00000004exon8015660780156942+
GWHAAZE00000004exon8015704980157335+
GWHAAZE00000004exon8015744480157702+
GWHAAZE00000004exon8015777680160837+
GWHAAZE00000004exon8016100980161080+
GWHAAZE00000004exon8016160280161655+
GWHAAZE00000004exon8016179780161899+
GWHAAZE00000004five_prime_UTR8015269380152929+
GWHAAZE00000004CDS8015293080153013+
GWHAAZE00000004CDS8015360380153866+
GWHAAZE00000004CDS8015494580155244+
GWHAAZE00000004CDS8015535180155443+
GWHAAZE00000004CDS8015582780155988+
GWHAAZE00000004CDS8015606380156283+
GWHAAZE00000004CDS8015637680156556+
GWHAAZE00000004CDS8015660780156942+
GWHAAZE00000004CDS8015704980157335+
GWHAAZE00000004CDS8015744480157702+
GWHAAZE00000004CDS8015777680160837+
GWHAAZE00000004CDS8016100980161080+
GWHAAZE00000004CDS8016160280161655+
GWHAAZE00000004CDS8016179780161899+
Transcript Sequence

Network for GWHGAAZE016643

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04997.13RNA_pol_Rpb1_1143281.50E-88
PF00623.21RNA_pol_Rpb1_23305112.70E-69
PF04983.19RNA_pol_Rpb1_35156783.00E-49
PF05000.18RNA_pol_Rpb1_47058091.30E-38
PF04998.18RNA_pol_Rpb1_581614063.10E-105
PF04992.15RNA_pol_Rpb1_688210662.10E-65
PF04990.13RNA_pol_Rpb1_7115112851.90E-53
PF05001.14RNA_pol_Rpb1_R152715411.2
PF05001.14RNA_pol_Rpb1_R153515481.4
PF05001.14RNA_pol_Rpb1_R154215550.15
PF05001.14RNA_pol_Rpb1_R154915620.0037
PF05001.14RNA_pol_Rpb1_R155615690.0034
PF05001.14RNA_pol_Rpb1_R156315760.0073
PF05001.14RNA_pol_Rpb1_R157015831.4
PF05001.14RNA_pol_Rpb1_R157715900.31
PF05001.14RNA_pol_Rpb1_R158415971.7
PF05001.14RNA_pol_Rpb1_R159116040.59
PF05001.14RNA_pol_Rpb1_R159816110.63
PF05001.14RNA_pol_Rpb1_R160516180.58
PF05001.14RNA_pol_Rpb1_R161216250.66
PF05001.14RNA_pol_Rpb1_R161916320.12
PF05001.14RNA_pol_Rpb1_R162616390.01
PF05001.14RNA_pol_Rpb1_R163316460.046
PF05001.14RNA_pol_Rpb1_R164016530.73
PF05001.14RNA_pol_Rpb1_R164716600.64
PF05001.14RNA_pol_Rpb1_R165416670.64
PF05001.14RNA_pol_Rpb1_R166116740.57
PF05001.14RNA_pol_Rpb1_R166816810.64
PF05001.14RNA_pol_Rpb1_R167516880.12
PF05001.14RNA_pol_Rpb1_R168216950.0038
PF05001.14RNA_pol_Rpb1_R169617090.59
PF05001.14RNA_pol_Rpb1_R171017233.2
PF05001.14RNA_pol_Rpb1_R174317560.17
PF05001.14RNA_pol_Rpb1_R175717702.8
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03006RPB1, POLR2A RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006366biological_processtranscription by RNA polymerase II
GO:0006351biological_processtranscription, DNA-templated
GO:0005665cellular_componentRNA polymerase II, core complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf40.675
SRR3591706second leaf22.791
SRR3591707mature leaf24.141
SRR3591708Shoot apex40.436
SRR3591709Stem42.978
SRR3591710White floral bud52.935
SRR3591711White flower65.847
SRR3591712Green floral bud36.997
SRR3591713Yellow flower47.491
SRP173429 SRR8316895Juvenile bud stage 23.411
SRR8316896Juvenile bud stage 29.618
SRR8316897Juvenile bud stage 14.012
SRR8316894Third green stage 14.071
SRR8316900Third green stage 33.108
SRR8316901Third green stage 31.223
SRR8316898Complete white stage 6.526
SRR8316899Complete white stage 32.598
SRR8316903Complete white stage 30.897
SRR8316902Silver flowering stage17.960
SRR8316904Silver flowering stage31.564
SRR8316905Silver flowering stage14.435
SRR8316906Gold flowering stage 39.058
SRR8316907Gold flowering stage 42.772
SRR8316908Gold flowering stage 43.783
SRP132670SRR6706286Control33.295
SRR6706287Light intensity 50%33.598
SRR6706288Light intensity 20%33.973
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.254
CNS0095593Slightly white alabastrum(diploid) 212.744
CNS0095594Slightly white alabastrum(diploid) 314.287
CNS0095595Whole white alabastrum(diploid) 213.001
CNS0095596Whole white alabastrum(diploid) 39.940
CNS0095597Whole white alabastrum(diploid) 412.580
CNS0095598Silvery flower (diploied) 129.194
CNS0095599Silvery flower (diploied) 226.252
CNS0095600Silvery flower (diploied) 360.121
CNS0095601Golden flower (diploid) 127.483
CNS0095602Golden flower (diploid) 267.748
CNS0095603Golden flower (diploid) 363.525
CNS0095604Slightly white alabastrum(tetraploid) 114.310
CNS0095605Slightly white alabastrum(tetraploid) 211.754
CNS0095606Slightly white alabastrum(tetraploid) 338.585
CNS0095607Whole white alabastrum(tetraploid) 111.645
CNS0095608Whole white alabastrum(tetraploid) 28.014
CNS0095609Whole white alabastrum(tetraploid) 324.611
CNS0095610Silvery flower (tetraploid) 145.738
CNS0095611Silvery flower (tetraploid) 253.930
CNS0095612Silvery flower (tetraploid) 339.729
CNS0095613Golden flower (tetraploid) 120.592
CNS0095614Golden flower (tetraploid) 236.764
CNS0095615Golden flower (tetraploid) 356.806
CRA001975CRR073297Stem 154.979
CRR073298Stem 253.067
CRR073299Stem 341.530
CRR073300Leaf 154.154
CRR073301Leaf 252.146
CRR073302Leaf 332.662
CRR073303Juvenile bud 141.134
CRR073304Juvenile bud 229.265
CRR073305Juvenile bud 383.502
CRR073306Third green 120.408
CRR073307Third green 216.627
CRR073308Third green 325.231
CRR073309Second white 117.632
CRR073310Second white 222.867
CRR073311Second white 332.428
CRR073312Silver flowering 128.079
CRR073313Silver flowering 229.383
CRR073314Silver flowering 328.194
CRR073315Gold flowering 115.285
CRR073316Gold flowering 227.410
CRR073317Gold flowering 322.585
CRR073318Tawny withering 137.022
CRR073319Tawny withering 235.862
CRR073320Tawny withering 330.069