Gene detail

Detail information of GWHGAAZE016627

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	BAJ53109.1	6.9986E-127	JHL20J20.16 [Jatropha curcas]
Swissprot	tr\|Q38912\|RAC3_ARATH	5E-123	Rac-like GTP-binding protein ARAC3 (Precursor)
trEMBL	tr\|E6NTZ9\|E6NTZ9_JATCU	3E-127	Uncharacterized protein {ECO:0000313\|EMBL:KDP36899.1}
TAIR10	AT1G75840.1	2E-96	RAC-like GTP binding protein 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	79940850	79944464	+
GWHAAZE00000004	mRNA	79940850	79944464	+
GWHAAZE00000004	exon	79940850	79940948	+
GWHAAZE00000004	exon	79942378	79942465	+
GWHAAZE00000004	exon	79942549	79942658	+
GWHAAZE00000004	exon	79943043	79943106	+
GWHAAZE00000004	exon	79943437	79943501	+
GWHAAZE00000004	exon	79943777	79943842	+
GWHAAZE00000004	exon	79943955	79944464	+
GWHAAZE00000004	CDS	79940850	79940948	+
GWHAAZE00000004	CDS	79942378	79942465	+
GWHAAZE00000004	CDS	79942549	79942658	+
GWHAAZE00000004	CDS	79943043	79943106	+
GWHAAZE00000004	CDS	79943437	79943501	+
GWHAAZE00000004	CDS	79943777	79943842	+
GWHAAZE00000004	CDS	79943955	79944053	+
GWHAAZE00000004	three_prime_UTR	79944054	79944464	+

Transcript Sequence
>GWHTAAZE016647 ATGAGCGCGTCCAGGTTCATAAAGTGCGTGACGGTGGGAGATGGTGCTGTCGGCAAGACCTGCATGTTGATTTCCTACACCAGTAACACCTTCCCTACGGATTATGTGCCAACTGTTTTCGACAATTTTAGTGCAAATGTGGTTGTGGATGGCGCTACTGTCAACCTTGGGTTATGGGATACTGCCGGTCAAGAGGATTACAATAGATTAAGACCGCTGAGCTATCGTGGAGCAGATGTATTTCTTCTTGCATTTTCCCTCATTAGTAAGGCCAGTTATGAAAATGTTGCAAAGAAGTGGATTCCTGAATTAAAACATTATGCACCTGGTGTTCCAGTCATTCTTGTTGGAACAAAGCAAGATCTGAGGGATGATCCACAGTTCTTTATAGACCACCCTGGTGCAGCTCCTATTTCAACTGCACAGGGAGAGGATCTGAAGAAAACTATTGGATCTCCCGCCTACATTGAATGTAGTTCGAAAACACAGCAGAATGTGAAGGCAGTTTTTGATGCAGCCATTAAAGTAGTGCTCCAACCTCCAAAACAGAAGAAGAAGAAAGGCGGACAATCAGCCTGTTCTATATTATGAAAGATTAGATTCGTCAAAAATAGAATATCTCATAATCTGCCCCCCTATCTCACGCAGCCTGATGATTTTTCAAATTCTTTCCTTTCCTTTTTGTTTTCTTATTTTCTTTTTTCCTTCGAGGAAGCAGCGCAAGCCTTGGTGTATAGTCTCCACTTACTGTCTAAGTTTTAATGTTTAAGGCATGGATCGGGTGGGTGGGGTTTTATTTAGTGCTGTTCTTGAACTCATATGATCTGTCTTTTTTGTTGACTAGATTTGTCTATTATATTTTTAACAAAGATGTTGTGAAGGTGATGTTATTTTAAATGTTTGGTGTCCTGTACTGCATATAGTTTCCAACTAGATTTATTTGCTTCAAAGAGGTTTTTAAGTTAGGCACATGCGTTTTGATTGGGATGGAATAAAAGTGAC

Network for GWHGAAZE016627

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00071.23	Ras	8	178	1.40E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04392	RAC1	Ras signaling pathway	map04014
		Rap1 signaling pathway	map04015
		MAPK signaling pathway	map04010
		MAPK signaling pathway - fly	map04013
		Wnt signaling pathway	map04310
		VEGF signaling pathway	map04370
		Sphingolipid signaling pathway	map04071
		cAMP signaling pathway	map04024
		PI3K-Akt signaling pathway	map04151
		Phagosome	map04145
		Focal adhesion	map04510
		Adherens junction	map04520
		Tight junction	map04530
		Regulation of actin cytoskeleton	map04810
		Toll-like receptor signaling pathway	map04620
		Natural killer cell mediated cytotoxicity	map04650
		B cell receptor signaling pathway	map04662
		Fc epsilon RI signaling pathway	map04664
		Fc gamma R-mediated phagocytosis	map04666
		Leukocyte transendothelial migration	map04670
		Chemokine signaling pathway	map04062
		Pancreatic secretion	map04972
		Neurotrophin signaling pathway	map04722
		Axon guidance	map04360
		Axon regeneration	map04361
		Osteoclast differentiation	map04380

Gene Ontology

GO term	Ontology	Name
GO:0007264	biological_process	small GTPase mediated signal transduction
GO:0003924	molecular_function	GTPase activity
GO:0005525	molecular_function	GTP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.174
	SRR3591706	second leaf	14.286
	SRR3591707	mature leaf	7.054
	SRR3591708	Shoot apex	17.900
	SRR3591709	Stem	5.141
	SRR3591710	White floral bud	5.686
	SRR3591711	White flower	3.147
	SRR3591712	Green floral bud	55.582
	SRR3591713	Yellow flower	1.248
SRP173429	SRR8316895	Juvenile bud stage	21.077
	SRR8316896	Juvenile bud stage	41.683
	SRR8316897	Juvenile bud stage	20.857
	SRR8316894	Third green stage	14.674
	SRR8316900	Third green stage	49.639
	SRR8316901	Third green stage	58.864
	SRR8316898	Complete white stage	1.060
	SRR8316899	Complete white stage	8.601
	SRR8316903	Complete white stage	2.014
	SRR8316902	Silver flowering stage	1.318
	SRR8316904	Silver flowering stage	1.434
	SRR8316905	Silver flowering stage	0.268
	SRR8316906	Gold flowering stage	1.877
	SRR8316907	Gold flowering stage	2.085
	SRR8316908	Gold flowering stage	1.887
SRP132670	SRR6706286	Control	11.825
	SRR6706287	Light intensity 50%	12.038
	SRR6706288	Light intensity 20%	12.730
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	63.162
	CNS0095593	Slightly white alabastrum(diploid) 2	45.518
	CNS0095594	Slightly white alabastrum(diploid) 3	73.237
	CNS0095595	Whole white alabastrum(diploid) 2	73.806
	CNS0095596	Whole white alabastrum(diploid) 3	87.970
	CNS0095597	Whole white alabastrum(diploid) 4	81.974
	CNS0095598	Silvery flower (diploied) 1	8.434
	CNS0095599	Silvery flower (diploied) 2	6.922
	CNS0095600	Silvery flower (diploied) 3	1.915
	CNS0095601	Golden flower (diploid) 1	7.194
	CNS0095602	Golden flower (diploid) 2	3.036
	CNS0095603	Golden flower (diploid) 3	3.561
	CNS0095604	Slightly white alabastrum(tetraploid) 1	116.599
	CNS0095605	Slightly white alabastrum(tetraploid) 2	116.595
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.556
	CNS0095607	Whole white alabastrum(tetraploid) 1	135.728
	CNS0095608	Whole white alabastrum(tetraploid) 2	128.156
	CNS0095609	Whole white alabastrum(tetraploid) 3	80.510
	CNS0095610	Silvery flower (tetraploid) 1	1.235
	CNS0095611	Silvery flower (tetraploid) 2	2.517
	CNS0095612	Silvery flower (tetraploid) 3	1.744
	CNS0095613	Golden flower (tetraploid) 1	1.626
	CNS0095614	Golden flower (tetraploid) 2	2.554
	CNS0095615	Golden flower (tetraploid) 3	0.639
CRA001975	CRR073297	Stem 1	17.998
	CRR073298	Stem 2	15.445
	CRR073299	Stem 3	9.924
	CRR073300	Leaf 1	23.115
	CRR073301	Leaf 2	20.079
	CRR073302	Leaf 3	18.642
	CRR073303	Juvenile bud 1	9.708
	CRR073304	Juvenile bud 2	8.199
	CRR073305	Juvenile bud 3	6.353
	CRR073306	Third green 1	2.154
	CRR073307	Third green 2	4.867
	CRR073308	Third green 3	2.409
	CRR073309	Second white 1	0.736
	CRR073310	Second white 2	0.644
	CRR073311	Second white 3	0.993
	CRR073312	Silver flowering 1	0.857
	CRR073313	Silver flowering 2	0.621
	CRR073314	Silver flowering 3	0.099
	CRR073315	Gold flowering 1	6.877
	CRR073316	Gold flowering 2	7.089
	CRR073317	Gold flowering 3	7.386
	CRR073318	Tawny withering 1	7.063
	CRR073319	Tawny withering 2	7.216
	CRR073320	Tawny withering 3	6.938