Gene detail

Detail information of GWHGAAZE016626

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002279471.2	PREDICTED: ABC transporter B family member 13-like [Vitis vinifera]
Swissprot	tr\|Q9C7F8\|AB13B_ARATH	ABC transporter B family member 13
trEMBL	tr\|A5CAU4\|A5CAU4_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN71068.1}
TAIR10	AT1G27940.1	P-glycoprotein 13

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	79925794	79931520	+
GWHAAZE00000004	mRNA	79925794	79931520	+
GWHAAZE00000004	exon	79925794	79926078	+
GWHAAZE00000004	exon	79926155	79926209	+
GWHAAZE00000004	exon	79926338	79926513	+
GWHAAZE00000004	exon	79926917	79927117	+
GWHAAZE00000004	exon	79927226	79927485	+
GWHAAZE00000004	exon	79927562	79927875	+
GWHAAZE00000004	exon	79927995	79928218	+
GWHAAZE00000004	exon	79928744	79929509	+
GWHAAZE00000004	exon	79929603	79929866	+
GWHAAZE00000004	exon	79930325	79931520	+
GWHAAZE00000004	CDS	79925794	79926078	+
GWHAAZE00000004	CDS	79926155	79926209	+
GWHAAZE00000004	CDS	79926338	79926513	+
GWHAAZE00000004	CDS	79926917	79927117	+
GWHAAZE00000004	CDS	79927226	79927485	+
GWHAAZE00000004	CDS	79927562	79927875	+
GWHAAZE00000004	CDS	79927995	79928218	+
GWHAAZE00000004	CDS	79928744	79929509	+
GWHAAZE00000004	CDS	79929603	79929866	+
GWHAAZE00000004	CDS	79930325	79931520	+

Transcript Sequence
>GWHTAAZE016646 ATGGGAGAAGTGGAACTTGCTTCACCCCAAGATATCAATCAGAATGCAGACCCCAAAATGGAGGTCCCATCCGTTTCAAATTCAAGCACGAAAAAGAGAGTTTCATTCTTTGGCCTATTTGCTGCAGCCGATAAAGTAGACTACTTTTTGATGTTCTTCGGAAGCATCGGAGCATGTATTCATGGTGCTGCTCTTCCTATATTTTTCATTTTGTTTGGCCGTATGATTGATTCTTTGGGACGCCTTTCTTCAGATCCTAATAGATTATCTTCTCAGGTTTCCAAGCATGCTCTGTACTTAGTTTACCTGGGATTAGGTGTTTTAGTATCAGCATGGATAGGTGTTGCCTGTTGGATGCAGACTGGAGAAAGGCAGACAGCTCGTTTGCGATTCAAATATCTCCAGTCAGTGTTAAGGAAAGACATTACATTTTTTGACATTGAAGCCAGGGATAGAAATATAATAGCTCACATTTCAAGCGACGCAATTTTAGTGCAGGATGCAATAGGCGATAAGACAGGCCACGGTTTACGTTATCTTTCCCAGTTCATTGTTGGTTTTGCCATAGGATTTACATCGGTGTGGCAGTTAACTCTTCTCACTTTGGCCGTAGTTCCATTGATAGCTATTGCTGGAGGATCTTATACAATCATCATGTCCACCCTTTCAGAAAAAGGCGAGGCTGCTTATGCTGAAGCTGGTAAAGTTGCAGAAGAGGTTATTTCACAAGTTCGCACTGTATACTCGTTTGTGGGAGAGGACAAAGCAATTGAAGCATACAGTGGATCACTTAAAAAGGCCCTCAAACTGGGGAAAAAGAGTGGATTTGCAAAAGGAATTGGTGTTGGATTTACATATGGGCTTTTGTTTTGTTCTTGGGCATTACTTCTCTGGTACGCCAGCATACTTGTCAGACATGGGGATACCAATGGTGGCAAAGCATTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCTCTAGGACAGGCTGCTCCAAATCTTGCGGCGATTGGTAAAGGTCTGGCTGCAATTACAAATATAAGAAGCATGATTGAAGAAGATTCTAATTCTTTGAAAGGGGCAGATAAGGGGATAGTGTTGCCAAAAGTCGAAGGCTCTATTGATTTTTGTGCGGTCAGTTTTGCTTATCCGTCTCGACCTAATATGGTATTTGAAGACCTTAGCTTTTCAGTTGGTGCTGGGAAAACATTTGCAATTGTTGGTCCAAGTGGTTCAGGAAAAAGCACTATTATTTCAATGGTTCAAAGATTCTATGAACCAACTTCAGGTAAAATATCGTTGGACGGGCATGATTTGAAGAATATGGAGTTAAAATGGTTGAGAGAACAGATGGGGTTAGTTAGTCAAGAACCAGCACTGTTTGCGACAAGTATAGCTCAGAACATTTTGTATGGTAAAAAAGGTGCAGATATGGATCAAATTATCCAAGCTTCCAAAGCTGCAAATGCGCATTCTTTTGTTCAGGGCTTACCTGATGGCTATCATACTCAGGTGGGAGAAGGAGGAACTCAGCTTTCGGGAGGGCAAAAACAGAGAATTGCTATTGCCAGAGCAGTTTTGAGATGCCCAAAGATATTACTTCTAGATGAGGCAACAAGCGCTCTGGATGCAGAATCAGAGCTCATTGTGCAACAAGCACTGAATACGGTCATGTCAAGTCGAACAACAATTATTGTTGCACATAGATTATCTACTATTAGAGATGTTGATACTATCCTTGTTCTAAAGAATGGTCAAGTTGTGGAGAGGGGGGCCCACTTGGATCTAATATCTCAAGGTGGAGAGTATGCTACTCTGGTGAGCTTGCAAGTATCAGAAAATATAGAAACTCCAAGCACAAGAAATTACATCGAAACAGCAAGATCTTCTAGCTTTCAAGAGTTAACAAATAATCAAAACGAGTTTAAGCCGATTCAGTTAACTGATGAAAATGTAGCCTCACCAAGCTTTACATCAACACCGTCCGTTTGGGAACTTGTTAAACTAAATGCACCAGAGTGGCCATATGCTGTGCTTGGGTCAGTGGGTGCTGTTTTGGCTGGCATGGAAGCACCTTTGTTTGCCCTTGGGATTACATATATCTTGACTGCGTTTTATTCTCATGATGATTCCCAAATCAAACGAGATGCTGGCCGGGCTTCACTGGTATTTGTGGGATTAGCTCTTATTACTATCCCTATATATCTGTTGCAGCACTATTTCTATACCTCAATGGGGGAGCGTCTCACTACTAGAGTTCGCTTATTAATGTTCTCAGCGATACTCTCAAACGAGGTTGGCTGGTTTGATTTGGATGAGAATAGTACTGGCTCGCTGACATCAAAGTTGGCGGCTGATGCAACATTAGTACGAAGCGCACTGGCGGACCGTTTGTCAACAATTGTGCAAAATGTTGCACTCACTGTGACTGCATTTGTCATTGCGTTTACACTAAGTTGGCGCTTAGCGTCTGTTATCATTGCCACCTTTCCCCTCCTAATTGGAGCTTCCATTGCTGAGGCAAGTCTCCAAAACGAAGCCCGAGATTACGGTCGTGCCTACTCCCGAGCTACTGCTGTGGCACGTGAAGCCATTACCAATATTCGTACCATTGCCGCATTTGGCGCTGAAGAACGAATATCACTCCAATTCGCGTCTGAACTAAGGGAACCAAACAAGCAAGCACTTTTACGCGGCCATATATCAGGTTTCGGTTACGGTTTGACCCAGCTCTTTGCTTTCTGTTCATACGCTCTTGGCCTTTGGTATGCATCAGTCCTAATCAAACACGAGAACTCAAACTTTGGTGACATAATCAAATCCTTCATGGTTTTAATCATCACCGCATTAGCAGTAGCTGAAACACTTGCTCTTGCACCCGACATTGTAAAGGGATCACAAGCACTTGGGTCAGTTTTCGCTATTCTTGGAAAAAAATCGGCCATAAACCCAGATGACCAAACATCAATTACAGTTACTGATATCAAGGGAGATATAGAGTTTAAAAACGTGAGTTTTAAGTATCCGGTGAGGCCAGATATAACCATTTTTGATGAGTTGAAATTCATGGTATGGGCGGGAAAGAGGATGGCGATAGTGGGGCCAAGTGGGTCCGGTAAGAGTACAGTGATCGCGCTAGTGATGAGATTTTATGACCCCTCTTCAGGCGCAGTCCTAATTGATGGGGTTGATATCAAGAAAATGAACTTGAAAACATTGAGGTTGAAAATAGGACTAGTGCAGCAAGAGCCAGCATTGTTCTCAACTACAATTTATGAAAACATTAAGTATGGGAAAAGAGAGGCGGGTGAGATAGAGATAATGAAGGCTGCAAGAGCGGCAAATGCACACGGATTCATTAGTCGAATGCCTGAGGGTTACCAGAGCCAAGTTGGGGACAAGGGGGTGATGTTGTCGGGTGGACAAAAGCAGAGAGTTGCTATTGCCAGAGCAATACTGAAAGACCCGTCGATTCTTCTCTTGGACGAAGCTACAAGTGCTTTGGATACTGCATCCGAGAAGATGGTTCAAGAAGCTCTCGATAGGCTAATGGAACGAAGAACAACGATCTTGGTGGCCCACAGGCTATCAACAGTACGCAGTGCTGACTCTATTGCTGTGCTGCAAAATGGGAAGGTGGCAGAAAGTGGGAGCCATGAAGAGCTAATTAGTGGAGGAGGAAGTATTTATTCACAGTTGGTTAGTTTACAGCAGGAGAAAAATGTACAAGTTGAGTAG

Network for GWHGAAZE016626

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	52	324	4.50E-55
PF00005.28	ABC_tran	393	541	4.70E-35
PF00664.24	ABC_membrane	683	951	4.60E-52
PF00005.28	ABC_tran	1019	1167	9.10E-33

Protein Sequence

>GWHPAAZE016636
MGEVELASPQDINQNADPKMEVPSVSNSSTKKRVSFFGLFAAADKVDYFLMFFGSIGACIHGAALPIFFILFGRMIDSLGRLSSDPNRLSSQVSKHALYLVYLGLGVLVSAWIGVACWMQTGERQTARLRFKYLQSVLRKDITFFDIEARDRNIIAHISSDAILVQDAIGDKTGHGLRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAIAGGSYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEDKAIEAYSGSLKKALKLGKKSGFAKGIGVGFTYGLLFCSWALLLWYASILVRHGDTNGGKAFTTIINVIFSGFALGQAAPNLAAIGKGLAAITNIRSMIEEDSNSLKGADKGIVLPKVEGSIDFCAVSFAYPSRPNMVFEDLSFSVGAGKTFAIVGPSGSGKSTIISMVQRFYEPTSGKISLDGHDLKNMELKWLREQMGLVSQEPALFATSIAQNILYGKKGADMDQIIQASKAANAHSFVQGLPDGYHTQVGEGGTQLSGGQKQRIAIARAVLRCPKILLLDEATSALDAESELIVQQALNTVMSSRTTIIVAHRLSTIRDVDTILVLKNGQVVERGAHLDLISQGGEYATLVSLQVSENIETPSTRNYIETARSSSFQELTNNQNEFKPIQLTDENVASPSFTSTPSVWELVKLNAPEWPYAVLGSVGAVLAGMEAPLFALGITYILTAFYSHDDSQIKRDAGRASLVFVGLALITIPIYLLQHYFYTSMGERLTTRVRLLMFSAILSNEVGWFDLDENSTGSLTSKLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWRLASVIIATFPLLIGASIAEASLQNEARDYGRAYSRATAVAREAITNIRTIAAFGAEERISLQFASELREPNKQALLRGHISGFGYGLTQLFAFCSYALGLWYASVLIKHENSNFGDIIKSFMVLIITALAVAETLALAPDIVKGSQALGSVFAILGKKSAINPDDQTSITVTDIKGDIEFKNVSFKYPVRPDITIFDELKFMVWAGKRMAIVGPSGSGKSTVIALVMRFYDPSSGAVLIDGVDIKKMNLKTLRLKIGLVQQEPALFSTTIYENIKYGKREAGEIEIMKAARAANAHGFISRMPEGYQSQVGDKGVMLSGGQKQRVAIARAILKDPSILLLDEATSALDTASEKMVQEALDRLMERRTTILVAHRLSTVRSADSIAVLQNGKVAESGSHEELISGGGSIYSQLVSLQQEKNVQVE

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.865
	SRR3591706	second leaf	11.691
	SRR3591707	mature leaf	7.043
	SRR3591708	Shoot apex	3.057
	SRR3591709	Stem	1.576
	SRR3591710	White floral bud	0.612
	SRR3591711	White flower	0.981
	SRR3591712	Green floral bud	1.123
	SRR3591713	Yellow flower	0.227
SRP173429	SRR8316895	Juvenile bud stage	0.756
	SRR8316896	Juvenile bud stage	1.109
	SRR8316897	Juvenile bud stage	0.666
	SRR8316894	Third green stage	0.271
	SRR8316900	Third green stage	0.806
	SRR8316901	Third green stage	0.829
	SRR8316898	Complete white stage	0.250
	SRR8316899	Complete white stage	0.303
	SRR8316903	Complete white stage	0.154
	SRR8316902	Silver flowering stage	0.115
	SRR8316904	Silver flowering stage	0.169
	SRR8316905	Silver flowering stage	0.061
	SRR8316906	Gold flowering stage	0.305
	SRR8316907	Gold flowering stage	0.478
	SRR8316908	Gold flowering stage	0.227
SRP132670	SRR6706286	Control	0.466
	SRR6706287	Light intensity 50%	0.460
	SRR6706288	Light intensity 20%	0.623
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.444
	CNS0095593	Slightly white alabastrum(diploid) 2	0.262
	CNS0095594	Slightly white alabastrum(diploid) 3	0.264
	CNS0095595	Whole white alabastrum(diploid) 2	0.175
	CNS0095596	Whole white alabastrum(diploid) 3	0.124
	CNS0095597	Whole white alabastrum(diploid) 4	0.192
	CNS0095598	Silvery flower (diploied) 1	0.122
	CNS0095599	Silvery flower (diploied) 2	0.329
	CNS0095600	Silvery flower (diploied) 3	0.279
	CNS0095601	Golden flower (diploid) 1	0.215
	CNS0095602	Golden flower (diploid) 2	0.198
	CNS0095603	Golden flower (diploid) 3	0.297
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.549
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.290
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.606
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.120
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.197
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.640
	CNS0095610	Silvery flower (tetraploid) 1	0.586
	CNS0095611	Silvery flower (tetraploid) 2	0.185
	CNS0095612	Silvery flower (tetraploid) 3	0.235
	CNS0095613	Golden flower (tetraploid) 1	0.271
	CNS0095614	Golden flower (tetraploid) 2	0.277
	CNS0095615	Golden flower (tetraploid) 3	0.060
CRA001975	CRR073297	Stem 1	1.031
	CRR073298	Stem 2	0.699
	CRR073299	Stem 3	0.290
	CRR073300	Leaf 1	1.056
	CRR073301	Leaf 2	0.647
	CRR073302	Leaf 3	0.347
	CRR073303	Juvenile bud 1	0.034
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.097
	CRR073306	Third green 1	0.117
	CRR073307	Third green 2	0.103
	CRR073308	Third green 3	0.067
	CRR073309	Second white 1	0.008
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.044
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.732
	CRR073316	Gold flowering 2	2.382
	CRR073317	Gold flowering 3	0.368
	CRR073318	Tawny withering 1	0.020
	CRR073319	Tawny withering 2	0.453
	CRR073320	Tawny withering 3	0.098