Gene detail

Detail information of GWHGAAZE016594

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009803495.1	0	PREDICTED: protein BASIC PENTACYSTEINE6-like [Nicotiana sylvestris]
Swissprot	tr\|Q8L999\|BPC6_ARATH	5E-149	Protein BASIC PENTACYSTEINE6
trEMBL	tr\|A0A068UIH3\|A0A068UIH3_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_26 {ECO:0000313\|EMBL:CDP07428.1}
TAIR10	AT5G42520.1	5E-109	basic pentacysteine 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	79307001	79308103	+
GWHAAZE00000004	mRNA	79307001	79308103	+
GWHAAZE00000004	exon	79307001	79307054	+
GWHAAZE00000004	exon	79307198	79308103	+
GWHAAZE00000004	CDS	79307001	79307054	+
GWHAAZE00000004	CDS	79307198	79308103	+

Transcript Sequence
>GWHTAAZE016614 ATGGATGACAGTGGGCATCGGGATAATGGAAGGCATAAACCGCCTCAGGGTCAGTGGCTGATGCAGCATCAGCCATCAATGAAGCAAATAATGGCCATTATGGCTGAAAGAGATGCAGCTATTCAAGAAAGAAATTTGGCCCTATCTGAAAAGAAATCCGCCTTAGCAGAGCGAGACATGGCTATCCTACAACGAGAATCAGCAATTGCTGAGCGAAATAATGCCATTATGGAAAGAGACAATGCCATTGCTACTCTTCAGTACCGGGAGAACTCCATGAATAATGGTAACATGTCCCCATGCCCACCTGGGAGCCAAATCTCTCGTGGGGTGAAGCACATGCACCACCCCCAGCAGCAGCACATACATCAACAACCCCACTTGGGTGAATCTTCGTACAGTCCGAGGGATTTACACATAAGCGATGCGGTACCAACGTCACCGGTTGCTCCCGAGCCTGCAAAAACCAAGCGGACAAAACGACCAAAGGAGCCAAAGGCCGTAACAACCAATAAGAGAACCTCAAAATCATCAAAAAAGGTTAAGAGGGAGGGCGAAGACCTGAATAATTGGGATGGTGGAGTTGATGACCTTAACAGGCAACTGAGTGGGTCAAAGCCGAACTGGAAGGATCAGGACCTGGGGCTAAACCAGGTCGCCTTTGATGAGTCAACCATGCCAGTGCCGGTCTGCTCATGTACTGGGGCCCTAAGACCATGCTACAAATGGGGAAATGGAGGATGGCAGTCATCCTGCTGCACCACCACCATGTCAATGTATCCTCTGCCGGCAGTGCCTAACAAGCGCCATGCTCGAGTTGGTGGTCGAAAAATGAGTGGAAGTGCATTCAATAAGCTTCTTAGCCGGCTTGCCGCAGAAGGACATGATCTTTCACATCCAGTTGATCTCAAGGATCACTGGGCAAAGCATGGGACTAATCGCTACATCACCATTAAGTAA

Network for GWHGAAZE016594

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06217.13	GAGA_bind	1	319	3.00E-108

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	BBR-BPC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	66.556
	SRR3591706	second leaf	51.681
	SRR3591707	mature leaf	57.238
	SRR3591708	Shoot apex	85.272
	SRR3591709	Stem	77.399
	SRR3591710	White floral bud	70.712
	SRR3591711	White flower	87.163
	SRR3591712	Green floral bud	75.675
	SRR3591713	Yellow flower	70.889
SRP173429	SRR8316895	Juvenile bud stage	45.486
	SRR8316896	Juvenile bud stage	46.555
	SRR8316897	Juvenile bud stage	23.060
	SRR8316894	Third green stage	19.150
	SRR8316900	Third green stage	59.688
	SRR8316901	Third green stage	61.928
	SRR8316898	Complete white stage	36.967
	SRR8316899	Complete white stage	108.104
	SRR8316903	Complete white stage	53.505
	SRR8316902	Silver flowering stage	33.368
	SRR8316904	Silver flowering stage	42.369
	SRR8316905	Silver flowering stage	19.592
	SRR8316906	Gold flowering stage	82.422
	SRR8316907	Gold flowering stage	73.705
	SRR8316908	Gold flowering stage	64.532
SRP132670	SRR6706286	Control	91.627
	SRR6706287	Light intensity 50%	93.617
	SRR6706288	Light intensity 20%	98.435
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	48.445
	CNS0095593	Slightly white alabastrum(diploid) 2	50.794
	CNS0095594	Slightly white alabastrum(diploid) 3	43.599
	CNS0095595	Whole white alabastrum(diploid) 2	40.511
	CNS0095596	Whole white alabastrum(diploid) 3	30.887
	CNS0095597	Whole white alabastrum(diploid) 4	41.771
	CNS0095598	Silvery flower (diploied) 1	85.868
	CNS0095599	Silvery flower (diploied) 2	73.526
	CNS0095600	Silvery flower (diploied) 3	112.744
	CNS0095601	Golden flower (diploid) 1	75.115
	CNS0095602	Golden flower (diploid) 2	115.043
	CNS0095603	Golden flower (diploid) 3	109.698
	CNS0095604	Slightly white alabastrum(tetraploid) 1	49.104
	CNS0095605	Slightly white alabastrum(tetraploid) 2	50.927
	CNS0095606	Slightly white alabastrum(tetraploid) 3	93.444
	CNS0095607	Whole white alabastrum(tetraploid) 1	30.099
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.757
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.955
	CNS0095610	Silvery flower (tetraploid) 1	52.244
	CNS0095611	Silvery flower (tetraploid) 2	74.206
	CNS0095612	Silvery flower (tetraploid) 3	63.420
	CNS0095613	Golden flower (tetraploid) 1	42.519
	CNS0095614	Golden flower (tetraploid) 2	54.379
	CNS0095615	Golden flower (tetraploid) 3	51.925
CRA001975	CRR073297	Stem 1	100.881
	CRR073298	Stem 2	90.281
	CRR073299	Stem 3	112.494
	CRR073300	Leaf 1	102.550
	CRR073301	Leaf 2	105.746
	CRR073302	Leaf 3	109.640
	CRR073303	Juvenile bud 1	93.306
	CRR073304	Juvenile bud 2	87.611
	CRR073305	Juvenile bud 3	88.060
	CRR073306	Third green 1	52.860
	CRR073307	Third green 2	41.363
	CRR073308	Third green 3	49.799
	CRR073309	Second white 1	43.897
	CRR073310	Second white 2	54.635
	CRR073311	Second white 3	40.065
	CRR073312	Silver flowering 1	30.713
	CRR073313	Silver flowering 2	27.859
	CRR073314	Silver flowering 3	27.108
	CRR073315	Gold flowering 1	63.267
	CRR073316	Gold flowering 2	72.956
	CRR073317	Gold flowering 3	57.359
	CRR073318	Tawny withering 1	98.523
	CRR073319	Tawny withering 2	74.015
	CRR073320	Tawny withering 3	77.617