Detail information of GWHGAAZE016565


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP07489.10unnamed protein product [Coffea canephora]
Swissprottr|P55233|GLGL1_BETVU0Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic (Precursor)
trEMBLtr|A0A068UGZ6|A0A068UGZ6_COFCA0Glucose-1-phosphate adenylyltransferase {ECO:0000256|RuleBase:RU003565}
TAIR10AT1G27680.10ADPGLC-PPase large subunit

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7887600978880775-
GWHAAZE00000004mRNA7887600978880775-
GWHAAZE00000004exon7887600978876110-
GWHAAZE00000004exon7887642278876482-
GWHAAZE00000004exon7887657078876676-
GWHAAZE00000004exon7887675678876860-
GWHAAZE00000004exon7887697978877065-
GWHAAZE00000004exon7887724578877400-
GWHAAZE00000004exon7887750278877708-
GWHAAZE00000004exon7887781678877909-
GWHAAZE00000004exon7887807178878126-
GWHAAZE00000004exon7887821778878300-
GWHAAZE00000004exon7887838478878476-
GWHAAZE00000004exon7887923778879410-
GWHAAZE00000004exon7887964578879773-
GWHAAZE00000004exon7888056678880775-
GWHAAZE00000004CDS7888056678880775-
GWHAAZE00000004CDS7887964578879773-
GWHAAZE00000004CDS7887923778879410-
GWHAAZE00000004CDS7887838478878476-
GWHAAZE00000004CDS7887821778878300-
GWHAAZE00000004CDS7887807178878126-
GWHAAZE00000004CDS7887781678877909-
GWHAAZE00000004CDS7887750278877708-
GWHAAZE00000004CDS7887724578877400-
GWHAAZE00000004CDS7887697978877065-
GWHAAZE00000004CDS7887675678876860-
GWHAAZE00000004CDS7887657078876676-
GWHAAZE00000004CDS7887642278876482-
GWHAAZE00000004CDS7887600978876110-
Transcript Sequence

Network for GWHGAAZE016565

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00483.24NTP_transferase913753.80E-81
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00975glgC Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500
Amino sugar and nucleotide sugar metabolismmap00520
Biofilm formation - Escherichia colimap02026

Gene Ontology

GO term OntologyName
GO:0005978biological_processglycogen biosynthetic process
GO:0009058biological_processbiosynthetic process
GO:0008878molecular_functionglucose-1-phosphate adenylyltransferase activity
GO:0016779molecular_functionnucleotidyltransferase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.727
SRR3591706second leaf1.117
SRR3591707mature leaf0.140
SRR3591708Shoot apex8.255
SRR3591709Stem1.433
SRR3591710White floral bud4.828
SRR3591711White flower4.341
SRR3591712Green floral bud8.983
SRR3591713Yellow flower1.778
SRP173429 SRR8316895Juvenile bud stage 16.863
SRR8316896Juvenile bud stage 24.108
SRR8316897Juvenile bud stage 9.423
SRR8316894Third green stage 6.384
SRR8316900Third green stage 8.596
SRR8316901Third green stage 8.719
SRR8316898Complete white stage 0.246
SRR8316899Complete white stage 6.046
SRR8316903Complete white stage 0.745
SRR8316902Silver flowering stage0.339
SRR8316904Silver flowering stage0.309
SRR8316905Silver flowering stage0.068
SRR8316906Gold flowering stage 0.405
SRR8316907Gold flowering stage 0.859
SRR8316908Gold flowering stage 0.572
SRP132670SRR6706286Control4.918
SRR6706287Light intensity 50%4.305
SRR6706288Light intensity 20%4.754
CNP0000432CNS0095592Slightly white alabastrum(diploid) 111.691
CNS0095593Slightly white alabastrum(diploid) 28.077
CNS0095594Slightly white alabastrum(diploid) 316.458
CNS0095595Whole white alabastrum(diploid) 29.165
CNS0095596Whole white alabastrum(diploid) 35.968
CNS0095597Whole white alabastrum(diploid) 45.228
CNS0095598Silvery flower (diploied) 15.827
CNS0095599Silvery flower (diploied) 26.797
CNS0095600Silvery flower (diploied) 31.792
CNS0095601Golden flower (diploid) 14.849
CNS0095602Golden flower (diploid) 23.623
CNS0095603Golden flower (diploid) 33.701
CNS0095604Slightly white alabastrum(tetraploid) 118.304
CNS0095605Slightly white alabastrum(tetraploid) 213.844
CNS0095606Slightly white alabastrum(tetraploid) 314.562
CNS0095607Whole white alabastrum(tetraploid) 110.666
CNS0095608Whole white alabastrum(tetraploid) 26.376
CNS0095609Whole white alabastrum(tetraploid) 39.906
CNS0095610Silvery flower (tetraploid) 10.375
CNS0095611Silvery flower (tetraploid) 23.193
CNS0095612Silvery flower (tetraploid) 31.755
CNS0095613Golden flower (tetraploid) 10.171
CNS0095614Golden flower (tetraploid) 20.173
CNS0095615Golden flower (tetraploid) 30.514
CRA001975CRR073297Stem 111.622
CRR073298Stem 28.411
CRR073299Stem 37.877
CRR073300Leaf 14.741
CRR073301Leaf 27.139
CRR073302Leaf 34.945
CRR073303Juvenile bud 13.063
CRR073304Juvenile bud 21.206
CRR073305Juvenile bud 31.585
CRR073306Third green 10.087
CRR073307Third green 20.094
CRR073308Third green 30.067
CRR073309Second white 10.060
CRR073310Second white 20.138
CRR073311Second white 30.060
CRR073312Silver flowering 10.339
CRR073313Silver flowering 20.491
CRR073314Silver flowering 30.453
CRR073315Gold flowering 10.354
CRR073316Gold flowering 20.122
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.729
CRR073319Tawny withering 20.549
CRR073320Tawny withering 30.182