Gene detail

Detail information of GWHGAAZE016554

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010254829.1	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g16250 [Nelumbo nucifera]
Swissprot	tr\|C0LGK4\|Y2165_ARATH	Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (Precursor)
trEMBL	tr\|F6H047\|F6H047_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45948.1}
TAIR10	AT2G16250.1	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78685739	78688987	-
GWHAAZE00000004	mRNA	78685739	78688987	-
GWHAAZE00000004	exon	78685739	78686331	-
GWHAAZE00000004	exon	78686468	78686490	-
GWHAAZE00000004	exon	78686644	78686751	-
GWHAAZE00000004	exon	78687063	78688987	-
GWHAAZE00000004	CDS	78687063	78688987	-
GWHAAZE00000004	CDS	78686644	78686751	-
GWHAAZE00000004	CDS	78686468	78686490	-
GWHAAZE00000004	CDS	78685739	78686331	-

Transcript Sequence
>GWHTAAZE016574 ATGGAAGTTCTACTCAAGCTTGTTCTCTCTCACTATTTACTCTTCTTGCTTATTGGCTCTGTGCTGACTCAGCAGCTCCAGCTGAGCTCCAGCGCCGACCGGTCGGCTCTGTTCCAGCTCCGGTGGTCGTTAGGGATTAGGGCCAGAGACTGGCCGAGAAAAGTAGACCCTTGCTTGGAGTGGGTTGGTGTTGAGTGTATTAATGGCCGAGTTGTCGGCATAAATTTAACCAGCTGCCGGAGGAGTCGAATTGGCCGGCTTAATCCCCGGTTTTCGGTTGATTCTTTAGTTAATTTTACCGTATTGGTTTCGTTTAACTCATCGGGGTTTTCACTTCCAGGGTCGATACCAGAGTGGTTCGGCCAAGGCCTAACTGCACTCCAAGTTCTTGATCTTAGGTCTAGCTCAATTTTGGGTACAATTCCTTCATCACTTGGAACTATGACCACACTTAATTCATTGTATCTATCAGATAATTCACTCACTGGGGTCATTCCTCCTACTTTATCGTCGTTATCTTCGTTGTTGGTTCTTGATCTTTCGCACAATTTATTGACAGGGTCGATTCCATCTTCTTTCTCGGGTTTTGGCAATCTTTCAAAGCTTGACCTGTCCTCGAATTTCCTATCTGGGCCAATTCCTTCTGGTTTTGGCTCAATCTCTACTCTTCAGTTCTTGAATTTGAAAAATAATAGTCTCTCTGGTTCTGTTCCAGTTCAGTTTGGTAATCTTTCTAAATTGATTGAACTGGATCTTGGGTTCAATTCTCTTTCTGGGACATTATCAGAGGAATTGGGTGGGATGACAAGTTTGCAGAAAATGTCACTTGAGAATAATGAACTAGAGGGTCCATTTTCGGGTAGCTTGTTATTGAATCTGACCCAGTTGCAGAATGTTGTTCTTAGTTGGAATCATTTTAATGGTGAGCTTTCTGATTCTTTTGGGTCAATGCCTCAATTGCGCATTCTTGATATCTCCGGCAATAACTTCACTGGCGTTTTGCCAGACCTTGCATCACTTTTTAATGTCACTAGCGCTGTTTACAACTTTTCAAGCAATCTGTTCTATGGAAATCTGAATCGCCCCATTGGGAATTTTGGTTTGCTTGATCTCTCCGATAATTATTTTCAAGGCTCGGTTCCCAATATTACAGGAAGAAACATTGCAATAAAAGGAAATTGTTTTACGAGGGTTCCTAATCAGAAGAGTTCGGAGGATTGTAGGATATTTTATGCTAATAGGGGGCTAAGTTTCAATAACGATGAGCTAAATCCAAAGCAACCTTCAAAGAGCACAAAACGTCTGACTTATGTGATGGTGGGACTTTTTGGTGGAATTGGTTTCATTGTGCTTCTTGCGCTGGTCTTGGTGTTGCTCCTTAATATTTGTCACAAGGGAAATGAAATCCAAGGAGGGAACTCAAATGTGGTGCCAGTTCGTGAAGAAGCCAACACTGCACCTCCTAAGGTTACTGCTGATTTGTCGGGTCTTGGAGAATCATTTACGTACAAGCAATTGCTAGAAGCAACGAGTTATTTTTGTGATGCAAACCTAATTAAGAATGGCCACTCCGGTGACCTCTTTTGGGGAACCTTGGAAAATGAGTTCTCTGTAGTTATCAAGAAAGTCGATTTGCGTTCTTTTGGGTCAGACTCTTATTTGTTAGAGTTGGATTTTTTCAGCAAGGTTGCTCACTCAAGGTTGGTCCCTCTCCTGGGACATTGCTTGGAGCATGAGAATGAAAAGCTCTTGGTCTACAAATATATGCCGTATGGGGATTTGTCTAATTCCTTGTACCGTTTCACCAATTTGGAAGATGGCATTCCCCAGTCTTTGGATTGGATTACAAGATTGAAAATTGCAATAGGTGCTGCGGAAGGATTAGCTTACCTACACCATGAGTGTAATCCTCCTCTGGTCCACAGAGATATTCAAGCCAGCAGCATCCTTCTTGATGACAAATATGAAGTACGACTCGGAAGCTTGAGCGAGACTCGTGCTCAAGGAGAGGATCGCCAGAATATGATCACACGGACCTCAGAACAAAACCCTTCGGATTCACCCTCTACTTCGTGTACCTACGATGTATACTGTTTTGGAAAGGTCTTGCTCGAGCTTGTAACGGGTAAGCTCGGCCTCAGCCAAGAGTGGTTAGATCAAAATCTACCGTTCATCAACATATATGAGAAGGAACCGATGGCTAAGATTGTCGATCAATCCCTTATAGTGGACGAGGACCTACTCGAAGAAGTGTGGGCCGTGGCAATAGTGGCCAAATCATGCCTTAATCCCAAACCTTCGAAACGCCCTTTAATGAGACACATTCTTAGAGCTTTAGAAAACCCTTTTAGAGTAGTGAGAGACGATAATTTTAGCTCTTCGAGGCTAAGAACGACCTCGTCTAGGCAGTCTTGGAGTGCGGCTTTTTTCGGTAGTTGGCGTAACAGCTCATTTGAGAGTGCACATTTTCCGAGAGAAGCAACTAGAGAGGAGCAGAGTGGCCTAAAACAAGCCGGGCGATTAGGGTCTCAGGGCAGTGGTACGAATACGAATGGACATTCTTCTTCGCATAAAAGATTGTCCAGTGAGATTTTCCCTGAACCGATGGAAATGCAAGATTTAGAGACAGTGGATGAAAACCGTCAGTAA

Network for GWHGAAZE016554

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	150	207	1.30E-11
PF13855.7	LRR_8	222	281	1.00E-06
PF07714.18	PK_Tyr_Ser-Thr	519	779	1.00E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XIV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.663
	SRR3591706	second leaf	1.850
	SRR3591707	mature leaf	11.152
	SRR3591708	Shoot apex	1.337
	SRR3591709	Stem	22.412
	SRR3591710	White floral bud	5.504
	SRR3591711	White flower	16.279
	SRR3591712	Green floral bud	2.375
	SRR3591713	Yellow flower	17.432
SRP173429	SRR8316895	Juvenile bud stage	1.596
	SRR8316896	Juvenile bud stage	1.777
	SRR8316897	Juvenile bud stage	1.678
	SRR8316894	Third green stage	1.042
	SRR8316900	Third green stage	0.717
	SRR8316901	Third green stage	1.572
	SRR8316898	Complete white stage	2.375
	SRR8316899	Complete white stage	8.428
	SRR8316903	Complete white stage	5.447
	SRR8316902	Silver flowering stage	5.947
	SRR8316904	Silver flowering stage	9.524
	SRR8316905	Silver flowering stage	4.885
	SRR8316906	Gold flowering stage	19.051
	SRR8316907	Gold flowering stage	13.675
	SRR8316908	Gold flowering stage	26.233
SRP132670	SRR6706286	Control	2.148
	SRR6706287	Light intensity 50%	1.957
	SRR6706288	Light intensity 20%	1.714
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.129
	CNS0095593	Slightly white alabastrum(diploid) 2	2.837
	CNS0095594	Slightly white alabastrum(diploid) 3	1.526
	CNS0095595	Whole white alabastrum(diploid) 2	2.040
	CNS0095596	Whole white alabastrum(diploid) 3	0.247
	CNS0095597	Whole white alabastrum(diploid) 4	1.267
	CNS0095598	Silvery flower (diploied) 1	6.447
	CNS0095599	Silvery flower (diploied) 2	3.406
	CNS0095600	Silvery flower (diploied) 3	9.621
	CNS0095601	Golden flower (diploid) 1	3.994
	CNS0095602	Golden flower (diploid) 2	8.231
	CNS0095603	Golden flower (diploid) 3	7.780
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.749
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.185
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.460
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.272
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.406
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.262
	CNS0095610	Silvery flower (tetraploid) 1	7.734
	CNS0095611	Silvery flower (tetraploid) 2	5.781
	CNS0095612	Silvery flower (tetraploid) 3	3.293
	CNS0095613	Golden flower (tetraploid) 1	4.136
	CNS0095614	Golden flower (tetraploid) 2	5.278
	CNS0095615	Golden flower (tetraploid) 3	4.345
CRA001975	CRR073297	Stem 1	2.610
	CRR073298	Stem 2	2.034
	CRR073299	Stem 3	0.919
	CRR073300	Leaf 1	3.569
	CRR073301	Leaf 2	2.511
	CRR073302	Leaf 3	3.320
	CRR073303	Juvenile bud 1	3.226
	CRR073304	Juvenile bud 2	1.987
	CRR073305	Juvenile bud 3	5.045
	CRR073306	Third green 1	1.363
	CRR073307	Third green 2	1.507
	CRR073308	Third green 3	1.914
	CRR073309	Second white 1	1.707
	CRR073310	Second white 2	1.731
	CRR073311	Second white 3	0.944
	CRR073312	Silver flowering 1	2.962
	CRR073313	Silver flowering 2	3.084
	CRR073314	Silver flowering 3	2.838
	CRR073315	Gold flowering 1	2.641
	CRR073316	Gold flowering 2	7.514
	CRR073317	Gold flowering 3	5.698
	CRR073318	Tawny withering 1	13.226
	CRR073319	Tawny withering 2	18.405
	CRR073320	Tawny withering 3	8.140