Gene detail

Detail information of GWHGAAZE016542

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664668.1	0	PREDICTED: zinc finger protein JACKDAW-like isoform X2 [Vitis vinifera]
Swissprot	tr\|Q9LVQ7\|IDD1_ARATH	3E-141	Protein indeterminate-domain 1 {ECO:0000303\|PubMed:16784536}
trEMBL	tr\|E0CQ24\|E0CQ24_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19670.3}
TAIR10	AT3G50700.1	9E-101	indeterminate(ID)-domain 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78437679	78439937	-
GWHAAZE00000004	mRNA	78437679	78439937	-
GWHAAZE00000004	exon	78437679	78438511	-
GWHAAZE00000004	exon	78439031	78439227	-
GWHAAZE00000004	exon	78439321	78439717	-
GWHAAZE00000004	exon	78439808	78439937	-
GWHAAZE00000004	CDS	78439808	78439937	-
GWHAAZE00000004	CDS	78439321	78439717	-
GWHAAZE00000004	CDS	78439031	78439227	-
GWHAAZE00000004	CDS	78437679	78438511	-

Transcript Sequence
>GWHTAAZE016562 ATGGTGGAGTTGGAAAATCCTTCGGCAATGACGGCCTCTGCAACTTCAGCTGAAGCTAGCAATGTGTCATCTTATGGAGTTGATAATCAAATTCCACCGAAGAAAAAGCGGAATCTCCCAGGGATGCCCGATCCTGATGCGGAGGTGATTGCGCTTTCACCGAAAACTCTAATGGCGACGAACAGATTCGTGTGCGAGATCTGCAGCAAAGGATTTCAGCGAGACCAGAACCTTCAGCTCCACCGGCGGGGCCATAACTTGCCGTGGAAGCTAAAGCAACGAACGAGTAAAGAGATTCGGAAGCGAGTTTACGTTTGTCCAGAATCTGCTTGCGTTCACCACGATCCTTCGAGAGCTCTCGGAGATCTCACCGGAATCAAAAAGCACTTCTGTAGGAAACACGGCGAGAAGAAGTGGAAGTGTGAAAGGTGCTCGAAAAAATACGCAGTACAGTCCGATTGGAAAGCGCATATGAAGACTTGTGGAACTAGAGAGTATAGATGTGATTGCGGAACTTTGTTCTCAAGGAGAGATAGCTTCATTACGCATAGAGCTTTTTGTGATGCTCTAGCTCAGGAGAGTGAGAGATCTCAAACCCTAGCCGTTCCGAACTCCGATGGAAATCTGATGGTTGAGGCTGTGCAGGCGGCGGCAAGTCCACCGCCGCCGCCACTCACTCCGTCTACCGGCGTTCTATCTCCGGTTCTGTCCATTCAAAGCTCAGATTTGCCAGAAAATCCACCGGTTTCACAGCCACCAGTGGCGTCTACCTGCCCAGCCACTGCCACCCCCAAGGCCGCTACAGGCACCAGCGCCACCACAGCAAGCGCCTCCTCCACGTCTAGCGGTAGTGGTAATGTAAGTAGAAGCAGCGGTGTATTTGCGAGTATATTTGCATCAACAGCGCCTGCCTGTGCTTCACATTCGTCCCAAACACCGTCTTCGTACTCCGATCTACTATGTGCCATGGCTGGCTCCGAACGCACAACCACAGAACCAATGTCCCTATCCCTCTCGTCATCACTCTACCTCTCAAGCACTGCCTCCTTATTCCCGACTTCCGATCAAGACCACCGCAGGCAATACGCCCCATCGCCCCAACCTGCCTTATCCGCCACTGCATTGCTCCAAAAGGCAGCTCAAATGGGCGCCACCGCGTCCAATTCCTCATTCCTCCGTGGCCTTGGCTTTACAATGTCGCCTTCGATAGACCATCAAGAAAATACCACCAATAACACCACACACTGGAGTACACATGGCAAAGAAGAGAACAGGTCGGGTACACCTGGCCTTGGACTCCGGCTACCCTCTGACGGAGTAGTACCCAATTACCCAAATCTTATTATGGGTCAATCCTCACTTTTTCCCAACAAGCCAACCACACTTGATCTTCTCGGACTTGGAATAGGCCCTAACGGAGGTGGTCCCTCCGATGAGTTCTCGGACTTTTTAACATCAATGAGTGGTGGGCTTGATGTTAGTGGAGCTTCTTTTGGAGTGAACTCCGCCGGAGAAAATTGGGAAGATGCCGGAGATAGGAAGCCGGAGCTGCTATAG

Network for GWHGAAZE016542

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00096.27	zf-C2H2	63	85	0.009

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.681
	SRR3591706	second leaf	12.726
	SRR3591707	mature leaf	11.862
	SRR3591708	Shoot apex	26.438
	SRR3591709	Stem	29.994
	SRR3591710	White floral bud	12.246
	SRR3591711	White flower	16.913
	SRR3591712	Green floral bud	19.612
	SRR3591713	Yellow flower	19.899
SRP173429	SRR8316895	Juvenile bud stage	19.506
	SRR8316896	Juvenile bud stage	24.215
	SRR8316897	Juvenile bud stage	10.579
	SRR8316894	Third green stage	13.028
	SRR8316900	Third green stage	39.568
	SRR8316901	Third green stage	35.428
	SRR8316898	Complete white stage	6.325
	SRR8316899	Complete white stage	42.848
	SRR8316903	Complete white stage	12.170
	SRR8316902	Silver flowering stage	10.535
	SRR8316904	Silver flowering stage	13.121
	SRR8316905	Silver flowering stage	8.135
	SRR8316906	Gold flowering stage	30.596
	SRR8316907	Gold flowering stage	27.072
	SRR8316908	Gold flowering stage	36.598
SRP132670	SRR6706286	Control	45.761
	SRR6706287	Light intensity 50%	40.720
	SRR6706288	Light intensity 20%	40.575
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.576
	CNS0095593	Slightly white alabastrum(diploid) 2	21.642
	CNS0095594	Slightly white alabastrum(diploid) 3	25.936
	CNS0095595	Whole white alabastrum(diploid) 2	21.456
	CNS0095596	Whole white alabastrum(diploid) 3	17.699
	CNS0095597	Whole white alabastrum(diploid) 4	18.330
	CNS0095598	Silvery flower (diploied) 1	29.389
	CNS0095599	Silvery flower (diploied) 2	22.514
	CNS0095600	Silvery flower (diploied) 3	29.097
	CNS0095601	Golden flower (diploid) 1	24.555
	CNS0095602	Golden flower (diploid) 2	38.836
	CNS0095603	Golden flower (diploid) 3	33.631
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.711
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.499
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.095
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.920
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.455
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.116
	CNS0095610	Silvery flower (tetraploid) 1	20.194
	CNS0095611	Silvery flower (tetraploid) 2	19.488
	CNS0095612	Silvery flower (tetraploid) 3	14.533
	CNS0095613	Golden flower (tetraploid) 1	15.798
	CNS0095614	Golden flower (tetraploid) 2	23.505
	CNS0095615	Golden flower (tetraploid) 3	19.569
CRA001975	CRR073297	Stem 1	64.996
	CRR073298	Stem 2	64.932
	CRR073299	Stem 3	63.908
	CRR073300	Leaf 1	80.011
	CRR073301	Leaf 2	90.620
	CRR073302	Leaf 3	61.089
	CRR073303	Juvenile bud 1	66.368
	CRR073304	Juvenile bud 2	33.604
	CRR073305	Juvenile bud 3	115.295
	CRR073306	Third green 1	25.245
	CRR073307	Third green 2	19.894
	CRR073308	Third green 3	21.314
	CRR073309	Second white 1	35.461
	CRR073310	Second white 2	30.739
	CRR073311	Second white 3	37.928
	CRR073312	Silver flowering 1	46.745
	CRR073313	Silver flowering 2	49.607
	CRR073314	Silver flowering 3	35.591
	CRR073315	Gold flowering 1	27.549
	CRR073316	Gold flowering 2	35.496
	CRR073317	Gold flowering 3	29.471
	CRR073318	Tawny withering 1	56.942
	CRR073319	Tawny withering 2	69.402
	CRR073320	Tawny withering 3	59.767