Detail information of GWHGAAZE016530


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010254967.12.55748E-67PREDICTED: E3 ubiquitin-protein ligase RNF185-like [Nelumbo nucifera]
Swissprottr|O64425|RMA1_ARATH3E-27E3 ubiquitin-protein ligase RMA1
trEMBLtr|B9GP24|B9GP24_POPTR3E-64Zinc finger family protein {ECO:0000313|EMBL:EEE81743.1}
TAIR10AT1G19310.14E-44RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7830084878302056-
GWHAAZE00000004mRNA7830084878302056-
GWHAAZE00000004exon7830201678302056-
GWHAAZE00000004exon7830084878301337-
GWHAAZE00000004five_prime_UTR7830201678302056-
GWHAAZE00000004five_prime_UTR7830133178301337-
GWHAAZE00000004CDS7830084878301330-
Transcript Sequence

Network for GWHGAAZE016530

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0194GO:0006102 isocitrate metabolic process GOslim:biological_process
GO:0004450 isocitrate dehydrogenase (NADP+) activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00097.26zf-C3HC429691.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10666RNF5 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf37.986
SRR3591706second leaf18.237
SRR3591707mature leaf11.813
SRR3591708Shoot apex38.132
SRR3591709Stem40.672
SRR3591710White floral bud30.835
SRR3591711White flower31.205
SRR3591712Green floral bud32.997
SRR3591713Yellow flower30.303
SRP173429 SRR8316895Juvenile bud stage 22.069
SRR8316896Juvenile bud stage 32.156
SRR8316897Juvenile bud stage 15.716
SRR8316894Third green stage 13.913
SRR8316900Third green stage 30.768
SRR8316901Third green stage 39.426
SRR8316898Complete white stage 21.666
SRR8316899Complete white stage 62.419
SRR8316903Complete white stage 23.820
SRR8316902Silver flowering stage15.507
SRR8316904Silver flowering stage15.534
SRR8316905Silver flowering stage6.968
SRR8316906Gold flowering stage 25.702
SRR8316907Gold flowering stage 25.571
SRR8316908Gold flowering stage 32.746
SRP132670SRR6706286Control52.499
SRR6706287Light intensity 50%47.645
SRR6706288Light intensity 20%55.766
CNP0000432CNS0095592Slightly white alabastrum(diploid) 134.239
CNS0095593Slightly white alabastrum(diploid) 234.994
CNS0095594Slightly white alabastrum(diploid) 325.368
CNS0095595Whole white alabastrum(diploid) 235.459
CNS0095596Whole white alabastrum(diploid) 336.497
CNS0095597Whole white alabastrum(diploid) 434.156
CNS0095598Silvery flower (diploied) 134.124
CNS0095599Silvery flower (diploied) 227.356
CNS0095600Silvery flower (diploied) 337.163
CNS0095601Golden flower (diploid) 132.782
CNS0095602Golden flower (diploid) 250.405
CNS0095603Golden flower (diploid) 341.197
CNS0095604Slightly white alabastrum(tetraploid) 142.658
CNS0095605Slightly white alabastrum(tetraploid) 236.763
CNS0095606Slightly white alabastrum(tetraploid) 353.604
CNS0095607Whole white alabastrum(tetraploid) 128.770
CNS0095608Whole white alabastrum(tetraploid) 224.861
CNS0095609Whole white alabastrum(tetraploid) 343.070
CNS0095610Silvery flower (tetraploid) 144.774
CNS0095611Silvery flower (tetraploid) 239.800
CNS0095612Silvery flower (tetraploid) 338.549
CNS0095613Golden flower (tetraploid) 136.666
CNS0095614Golden flower (tetraploid) 236.561
CNS0095615Golden flower (tetraploid) 333.343
CRA001975CRR073297Stem 132.669
CRR073298Stem 233.916
CRR073299Stem 337.483
CRR073300Leaf 137.153
CRR073301Leaf 241.877
CRR073302Leaf 344.331
CRR073303Juvenile bud 137.454
CRR073304Juvenile bud 234.883
CRR073305Juvenile bud 339.857
CRR073306Third green 127.042
CRR073307Third green 226.965
CRR073308Third green 323.030
CRR073309Second white 123.460
CRR073310Second white 215.145
CRR073311Second white 312.075
CRR073312Silver flowering 112.735
CRR073313Silver flowering 214.422
CRR073314Silver flowering 315.202
CRR073315Gold flowering 113.943
CRR073316Gold flowering 213.530
CRR073317Gold flowering 313.046
CRR073318Tawny withering 124.276
CRR073319Tawny withering 221.372
CRR073320Tawny withering 324.718