Gene detail

Detail information of GWHGAAZE016522

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHY03308.1	0	allene oxide synthase [Camellia sinensis]
Swissprot	tr\|P48417\|CP74_LINUS	0	Allene oxide synthase, chloroplastic (Precursor)
trEMBL	tr\|A0A023UKW8\|A0A023UKW8_CAMSI	0	Allene oxide synthase {ECO:0000313\|EMBL:AHY03308.1}
TAIR10	AT5G42650.1	2E-171	allene oxide synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78162471	78164183	-
GWHAAZE00000004	mRNA	78162471	78164183	-
GWHAAZE00000004	exon	78163769	78164183	-
GWHAAZE00000004	exon	78162471	78163609	-
GWHAAZE00000004	CDS	78163769	78164183	-
GWHAAZE00000004	CDS	78162471	78163609	-

Transcript Sequence
>GWHTAAZE016542 ATGGCCCCCTTATCCTCTCTTCAACTCTCTCACCCATTACAAAATTGCTCCAAACTCTCCCGCCGCCTCATTTCCTCTCCTGTCACCGCCACTGTCACCGATAAACCCAATGTTGCATCACCCTCCCAGGCAGCACCACCTGAAACCATCGAACTCCCCATCAAACCACTCCTAGGCGACTTTGGCCTCCCCTTCATCGGCCCCATCAAAGATCGCCTCGATTTCTTCTACAACCAAGGCCGAGACGAGTTCTTCAAAACTCGAATCCGAAAATACAAATCCACCGTTTTCAGAACCAACATGCCCCCGGGCCCCTTCATTTCCTCGAATCCCAAAGTCATTGCTCTCCTCGATGCCAAAAGCTTCCCCGTACTCTTCAACATGTCCAAGGTCGAAAAGAAGGATACATTCACAGGTACATTTACACCGTCAATTAATCTCACTGGGGGCTACAGAGTCCTTGCTTATCAGGATCCTTCCGAGCAGAGTCATGCAAAATTGAAGCAGCTAGTGTTCTTCTTACTCAAATCTCGGCGAGATAGAGTAATCCCCGAGTTCCGCAATTCCTTTGCCGAAACATTCAACAGTCTCGAGAGCAAATTTAAATCGGAAACAAAGGTAAGTTTAAATGATGCGACCGACCAAGCATTGTTTAATTTTCTTGCACGGGCTCTGTGTGGGACTAATCCGTTGGTGACCGAGCTCGGATCTGACGGTCCGAAATTGATCGCAAAATGGATGCTGGTACAGGTCGCGCCACTACTGACACTGGGCCTCCCTAAGTTTATAGAAGATTTGTTACTCCACACATTTTCTTTGCCTTCATTTATAGCAAAAAAGGATTACCAGAGACTCTACAATTTCTTCTACGAATCATCTACTTTTTTCCTCGATGAAGCCGAAAAAACTGGCGTATCCAGGGAGGAGGCTTGCCATAACCTCGTCTTTGCCGCTTGTTTCAACGCATTCGGTGGGATGAAGATTCTGTTGCCAAACATTATAAAATGGATCGGTTCAGCCGGACCTGAACTCCACGCCAAATTAGCGAAGGAGATTAGATCCGCCGTGAAATCCGCTGGCGGGAATATAACAATGGCGGCATTGGATCAGATGCCATTGGCACAGTCTGTCGTGCATGAAACACTCCGTATGGAGCCGCCAGTGACAATGCAGTATGGGAGGGCTAAAAAGGACTTTATTATCGAATCTCATGATTCCGCATTCGAGATTAAGAAGGGGGAATTGTTGGTCGGGTACCAGCCTTTTGCGACGAAAGATGGGAGGATTTTCGAGAACTCCGAGGAATTTGTGGCAGATAGATTCGTTGGCAAAGGCGAGGAGTTGTTGAAGTACGTTTTGTGGTCGAATGGACCTGAGACGGATACTCCAGCCCTCGGGAATAAGCAGTGTGCTGGGAAGGATTTTGTTGTGTTGGCATCTAAGTTGTTTTTGACGGAGTTTTTTCTAAGGTATGATACTTTTGAGATTGTTGTTCGTCGGTCGGAGTTGGGTTCGAAGGTGATGGTAACGTCTCTGTCGAAAGCCAGTTCTTGA

Network for GWHGAAZE016522

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	342	492	6.60E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01723	AOS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		alpha-Linolenic acid metabolism	map00592

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding
GO:0004497	molecular_function	monooxygenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	92.768
	SRR3591706	second leaf	86.060
	SRR3591707	mature leaf	17.447
	SRR3591708	Shoot apex	102.259
	SRR3591709	Stem	1.240
	SRR3591710	White floral bud	2.743
	SRR3591711	White flower	1.377
	SRR3591712	Green floral bud	17.552
	SRR3591713	Yellow flower	0.051
SRP173429	SRR8316895	Juvenile bud stage	10.550
	SRR8316896	Juvenile bud stage	10.615
	SRR8316897	Juvenile bud stage	9.693
	SRR8316894	Third green stage	9.019
	SRR8316900	Third green stage	33.574
	SRR8316901	Third green stage	24.005
	SRR8316898	Complete white stage	2.127
	SRR8316899	Complete white stage	6.477
	SRR8316903	Complete white stage	3.490
	SRR8316902	Silver flowering stage	1.788
	SRR8316904	Silver flowering stage	3.828
	SRR8316905	Silver flowering stage	3.361
	SRR8316906	Gold flowering stage	1.130
	SRR8316907	Gold flowering stage	3.779
	SRR8316908	Gold flowering stage	2.678
SRP132670	SRR6706286	Control	35.884
	SRR6706287	Light intensity 50%	38.881
	SRR6706288	Light intensity 20%	40.139
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.110
	CNS0095593	Slightly white alabastrum(diploid) 2	21.345
	CNS0095594	Slightly white alabastrum(diploid) 3	10.129
	CNS0095595	Whole white alabastrum(diploid) 2	17.172
	CNS0095596	Whole white alabastrum(diploid) 3	28.591
	CNS0095597	Whole white alabastrum(diploid) 4	13.150
	CNS0095598	Silvery flower (diploied) 1	9.902
	CNS0095599	Silvery flower (diploied) 2	11.230
	CNS0095600	Silvery flower (diploied) 3	5.393
	CNS0095601	Golden flower (diploid) 1	4.199
	CNS0095602	Golden flower (diploid) 2	3.579
	CNS0095603	Golden flower (diploid) 3	3.265
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.318
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.469
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.448
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.935
	CNS0095609	Whole white alabastrum(tetraploid) 3	27.313
	CNS0095610	Silvery flower (tetraploid) 1	11.112
	CNS0095611	Silvery flower (tetraploid) 2	50.677
	CNS0095612	Silvery flower (tetraploid) 3	37.260
	CNS0095613	Golden flower (tetraploid) 1	2.487
	CNS0095614	Golden flower (tetraploid) 2	2.142
	CNS0095615	Golden flower (tetraploid) 3	5.078
CRA001975	CRR073297	Stem 1	86.373
	CRR073298	Stem 2	91.580
	CRR073299	Stem 3	97.075
	CRR073300	Leaf 1	55.604
	CRR073301	Leaf 2	62.605
	CRR073302	Leaf 3	54.377
	CRR073303	Juvenile bud 1	16.662
	CRR073304	Juvenile bud 2	29.436
	CRR073305	Juvenile bud 3	21.002
	CRR073306	Third green 1	11.834
	CRR073307	Third green 2	16.622
	CRR073308	Third green 3	6.370
	CRR073309	Second white 1	5.672
	CRR073310	Second white 2	1.829
	CRR073311	Second white 3	0.907
	CRR073312	Silver flowering 1	0.116
	CRR073313	Silver flowering 2	0.453
	CRR073314	Silver flowering 3	0.174
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.022
	CRR073317	Gold flowering 3	1.140
	CRR073318	Tawny withering 1	0.038
	CRR073319	Tawny withering 2	0.015
	CRR073320	Tawny withering 3	0.000