Gene detail

Detail information of GWHGAAZE016519

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002281968.2	0	PREDICTED: inactive protein kinase SELMODRAFT_444075 [Vitis vinifera]
Swissprot	tr\|P0DH62\|Y4407_SELML	2E-77	Inactive protein kinase SELMODRAFT_444075
trEMBL	tr\|E0CPW6\|E0CPW6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI19612.3}
TAIR10	AT3G13690.1	3E-147	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	78111251	78116867	+
GWHAAZE00000004	mRNA	78111251	78116867	+
GWHAAZE00000004	exon	78111251	78111527	+
GWHAAZE00000004	exon	78111952	78112079	+
GWHAAZE00000004	exon	78113519	78113613	+
GWHAAZE00000004	exon	78114062	78115062	+
GWHAAZE00000004	exon	78115338	78115498	+
GWHAAZE00000004	exon	78115839	78115915	+
GWHAAZE00000004	exon	78116486	78116867	+
GWHAAZE00000004	five_prime_UTR	78111251	78111337	+
GWHAAZE00000004	CDS	78111338	78111527	+
GWHAAZE00000004	CDS	78111952	78112079	+
GWHAAZE00000004	CDS	78113519	78113613	+
GWHAAZE00000004	CDS	78114062	78115062	+
GWHAAZE00000004	CDS	78115338	78115498	+
GWHAAZE00000004	CDS	78115839	78115915	+
GWHAAZE00000004	CDS	78116486	78116867	+

Transcript Sequence
>GWHTAAZE016539 CAACCACCACTCTCAAATCTTTTCTTCAATTTTCTTTCAGTTCCCTCACAGTTTCTGTGGCCGTAGTAACAATCCGACGAATCAGCAATGTTCGCGCCAAAAATGGACGCCAGAGACAGGGCGGCGCGTGAGTTAGACGCGCCGGCGGAGAAGGTGATCGTGGCCGTGAAGGCGGAGAAGGTGATCTCGAAGACCGCACTGGCCTGGGCTCTGACTAACGTTGTTCACCCCGGCGATTGCGTGACTTTGCTGGCTGTACTTTCCGCCGAGAAAACCGGAAGGAAGTTCTGGAGATTCCCGAGGTTGACCGGAGATTGCCGGAGTTCGAAGATGATGAGGGATCGGATAATTCAGATCTGCGAGTCTTGTTCTCAGATGGTTCTTCAATTTCATGATCAAATCGAGGTTGTTGTGCGGATTAAAGTTGTGTCGGGTACACCTGCTGGTGCTGTGGCAGCTGAAGCAAAAGGCAATGCGGCCAACTGGATCGTATTAGACAAAAAACTGAAGCAAGAGCGTAACAAGTGCATGGAGGAACTTCATTGCAACATTGTAGTGATGGAAAATTCTCAACCAAAAGTCCTTAGGCTCAATTTAGGATGTTCAAATGAACTCCAAACTCCCTTCTTTTCTCCTTCTTCTTCGCCCAGTCTCGATGTTGTGCAGGGCCACAAAATGAAGCATTCTACACCCGTGAGCAGTCCCGAGGAACCAACTACTTCCTATACAAGATCATTGGGAGAGAATTCAATTTCCAGTTCAGACGCATTGAATTCCTTTTTCCTCGTCTATGAACAAAACCCACTTTTCGAAGGACTTGACAGGGGAAAACATACACCAATTTATAAACGAACGGACTTGGAGGACGTTGGTTGTATTGAGGAAAGGATAATAAATCTCTCAATGACCCGAAAATTATACACCGCTAGTAACCAGAAGAAGGTACTTTGGATTCCTCAAAACCACATTGGTGATGGCAAAAACCCAACAAGAAATTACAGAAATACCCTTGAAACCCGATCTACCACTACCAGAACTGAACTGGATAACTTAAATAAACTAAACAAAACCAGTGATAGAGCACACGTTTTTAGCTATAGTATCAGAGAGGCGGTCTCTTTGCAAAGAACTTCTTCGGTACCTCCTCCTTTATGTTCGATGTGCCAACACAAGGCACCAGCTTTTGGAAAACCACCAAGACGGTTCGATTATGAAGAGCTAGAGGTAGCTACGGACGGGTTTTCAGATATGAATTTCTTAGCTGAAGGCGGGTTCGGGTTGGTTCACAGAGGAGTTCTAAAGGATGGGCTGGTGGTTGCAGTAAAGCAGTTGAAATTTGCCGGGTCACAAGGAGACTCCGATTTTTGCAGGGAAGTTCGGGTTTTAAGCTGTGCACAGCAGAGGAATGTTGTGTTGTTGGTTGGATATTGCATTGAGGGCAAGAAGAGAGTTTTAGTTTACGAGTATATTTGCAATGGATCTTTGCAATTTCATTTATATGGGAACAAGAAAATACATCTAGATTGGCGCTTGCGACTAAAGATAGCTATTGGTACAGCTAGAGGATTACGGTACCTTCACGAGGATTGCCGAGTTGGTTGTATAATTCATAGGGACATGCGGCCTAATAATATCCTCCTAACCCACGATTTTGAACCTCTGGTTGCTGATTTTGGGCTTGTTCAGTTGCACGCTGAATGGGATATATGTGATGTGGAGCGAGTTCTTGGAACTTCAGGGTATCTTGCACCTGAGTACTTTGATGGTGGAAGCGTTACAGAGAAAGTTGATATATATGCCTTTGGACTGGTATTATTAGAGCTAATTACTGGTCGGAAAATCAGCGATTTGCTATTCTATGAAGGGCGGAACTTTTTGTCCGAAATTTTCTGTCCTTCAGCTACACTGCAACCAGTTCATCTCTTGGCATATAAGTATCAATTACTTGATCCCTGTTTGGCCTCTTATCAATATAACAACTTTCCCAATGAACTACAAGCAATTGGTCGAGCTGCATCCTTGTGTCTACAGCGGGAACCGGAATCAAGACCTCCCATGTCAAAGGTTTCCTCTTCCCACTTTTATTATTCCTTTGAGTCCCTGTTTGGTTTGTTCTTTTGA

Network for GWHGAAZE016519

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	390	661	8.60E-36

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_PERK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.891
	SRR3591706	second leaf	6.036
	SRR3591707	mature leaf	3.476
	SRR3591708	Shoot apex	11.509
	SRR3591709	Stem	8.154
	SRR3591710	White floral bud	4.889
	SRR3591711	White flower	1.481
	SRR3591712	Green floral bud	12.644
	SRR3591713	Yellow flower	0.376
SRP173429	SRR8316895	Juvenile bud stage	2.558
	SRR8316896	Juvenile bud stage	5.085
	SRR8316897	Juvenile bud stage	1.749
	SRR8316894	Third green stage	2.298
	SRR8316900	Third green stage	4.326
	SRR8316901	Third green stage	4.561
	SRR8316898	Complete white stage	0.931
	SRR8316899	Complete white stage	4.543
	SRR8316903	Complete white stage	1.445
	SRR8316902	Silver flowering stage	0.377
	SRR8316904	Silver flowering stage	0.554
	SRR8316905	Silver flowering stage	0.310
	SRR8316906	Gold flowering stage	0.399
	SRR8316907	Gold flowering stage	0.512
	SRR8316908	Gold flowering stage	0.465
SRP132670	SRR6706286	Control	5.258
	SRR6706287	Light intensity 50%	6.028
	SRR6706288	Light intensity 20%	6.134
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.264
	CNS0095593	Slightly white alabastrum(diploid) 2	3.128
	CNS0095594	Slightly white alabastrum(diploid) 3	5.232
	CNS0095595	Whole white alabastrum(diploid) 2	3.367
	CNS0095596	Whole white alabastrum(diploid) 3	3.106
	CNS0095597	Whole white alabastrum(diploid) 4	3.272
	CNS0095598	Silvery flower (diploied) 1	1.988
	CNS0095599	Silvery flower (diploied) 2	2.299
	CNS0095600	Silvery flower (diploied) 3	0.992
	CNS0095601	Golden flower (diploid) 1	1.516
	CNS0095602	Golden flower (diploid) 2	1.030
	CNS0095603	Golden flower (diploid) 3	1.310
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.592
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.678
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.088
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.827
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.945
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.755
	CNS0095610	Silvery flower (tetraploid) 1	1.159
	CNS0095611	Silvery flower (tetraploid) 2	1.108
	CNS0095612	Silvery flower (tetraploid) 3	0.709
	CNS0095613	Golden flower (tetraploid) 1	0.260
	CNS0095614	Golden flower (tetraploid) 2	0.498
	CNS0095615	Golden flower (tetraploid) 3	0.250
CRA001975	CRR073297	Stem 1	7.993
	CRR073298	Stem 2	8.098
	CRR073299	Stem 3	5.626
	CRR073300	Leaf 1	7.476
	CRR073301	Leaf 2	7.374
	CRR073302	Leaf 3	5.210
	CRR073303	Juvenile bud 1	5.002
	CRR073304	Juvenile bud 2	3.460
	CRR073305	Juvenile bud 3	7.672
	CRR073306	Third green 1	0.332
	CRR073307	Third green 2	0.732
	CRR073308	Third green 3	0.455
	CRR073309	Second white 1	0.369
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.112
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.189
	CRR073314	Silver flowering 3	0.105
	CRR073315	Gold flowering 1	0.857
	CRR073316	Gold flowering 2	1.740
	CRR073317	Gold flowering 3	2.026
	CRR073318	Tawny withering 1	4.841
	CRR073319	Tawny withering 2	4.640
	CRR073320	Tawny withering 3	5.480