Gene detail

Detail information of GWHGAAZE016508

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664622.1	6.5357E-114	PREDICTED: probable transcription factor KAN4 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9FJV5\|KAN4_ARATH	2E-65	Probable transcription factor KAN4
trEMBL	tr\|F6H1F3\|F6H1F3_VITVI	1E-113	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45888.1}
TAIR10	AT5G42630.1	1E-50	Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	77903731	77907622	+
GWHAAZE00000004	mRNA	77903731	77907622	+
GWHAAZE00000004	exon	77903731	77904157	+
GWHAAZE00000004	exon	77904604	77904680	+
GWHAAZE00000004	exon	77904852	77904888	+
GWHAAZE00000004	exon	77905385	77905538	+
GWHAAZE00000004	exon	77907120	77907219	+
GWHAAZE00000004	exon	77907366	77907622	+
GWHAAZE00000004	CDS	77903731	77904157	+
GWHAAZE00000004	CDS	77904604	77904680	+
GWHAAZE00000004	CDS	77904852	77904888	+
GWHAAZE00000004	CDS	77905385	77905538	+
GWHAAZE00000004	CDS	77907120	77907219	+
GWHAAZE00000004	CDS	77907366	77907521	+
GWHAAZE00000004	three_prime_UTR	77907522	77907622	+

Transcript Sequence
>GWHTAAZE016528 ATGGATTCACCTTCCCCTGATCTCTCTCTTCAAATCAGCCCACCATCTATATCGAACACTGAATTTAAAGATATGGGTTTTCATGGGTTGGTGATAAAATCACCCTACAGTGACTGGAGCTCGGATTCCGGTAGCAGCGGAAGCGATTTAAGCCAAGAAAATGGCCTAATGTTGCTGCCAAACGGAGGCTTTAATCATGTTATTGTTGAGCCTACATTGAGCTTAGGGTTAAATAGGGCATCTCTGAATCCCCTGCCTCTACGAATACAAAGAAATTTTCAACCTCAAATCTATGGCCATGAGTTCAAGAGAACTTCAAGAATGACCCATGGTGTTAGAAGAAGTGTTAGGGCTCCTAGAATGAGATGGACTTCAACTCTTCATGCCCATTTTGTTCATGCAGTTCAACTTCTTGGCGGCCATGAAAGAGCAACACCAAAATCAGTGCTAGAGTTGATGAATGTGAAGGATCTAACCCTAGCTCATGTGAAGAGTCATTTACAGATGTATAGAACAGTGAAGAGTACCGACAAAGGAACGGGTGAAGGGCAGACTGCTATTGGTTTGAATCAAAGGACGGGGATGGTTGAAGTTGAGGCAGCAGCTGGGTTTCATTGTGACAATGCTATTAATACCATTCCTCCTTATTCTACAAGCCCATCATCAACTACTACTACACTACAAAAAGACCAAATTGGATTGTGGTCGTCATCATCTACAGAGACAAATGATTTGAGCCACACAACTCAACAAACTGCATTAAATTATTTTTGTTTCGGGACAAATGATACCAAGATAGATCGTCATGAGACAGAAAAGGAGGAGAATCATAATAGCAATAGTAATAATAGGTCAATGTTGCTGAATTTGGAGTTTACACTTGGAAGGCCAAGCTGGCAAATGGACTATGCTGCTTCCTCAAATGAACAACTCACCCTTCTCAAGTGTTAAACTATATCATATTATTATACATATATAATAATAATAGCAGTTTCATTTTATGACCGAGTAGCTAGTGCATGTTTAAATATATATAATATATGTTGTATGAA

Network for GWHGAAZE016508

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	GARP-G2-like

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.849
	SRR3591706	second leaf	3.327
	SRR3591707	mature leaf	0.667
	SRR3591708	Shoot apex	11.902
	SRR3591709	Stem	0.614
	SRR3591710	White floral bud	0.307
	SRR3591711	White flower	0.249
	SRR3591712	Green floral bud	0.576
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	1.627
	SRR8316896	Juvenile bud stage	0.784
	SRR8316897	Juvenile bud stage	0.962
	SRR8316894	Third green stage	0.402
	SRR8316900	Third green stage	0.922
	SRR8316901	Third green stage	0.708
	SRR8316898	Complete white stage	0.111
	SRR8316899	Complete white stage	1.848
	SRR8316903	Complete white stage	0.405
	SRR8316902	Silver flowering stage	0.308
	SRR8316904	Silver flowering stage	0.485
	SRR8316905	Silver flowering stage	0.065
	SRR8316906	Gold flowering stage	0.432
	SRR8316907	Gold flowering stage	0.099
	SRR8316908	Gold flowering stage	0.071
SRP132670	SRR6706286	Control	0.645
	SRR6706287	Light intensity 50%	0.532
	SRR6706288	Light intensity 20%	0.773
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.137
	CNS0095593	Slightly white alabastrum(diploid) 2	0.518
	CNS0095594	Slightly white alabastrum(diploid) 3	0.313
	CNS0095595	Whole white alabastrum(diploid) 2	0.393
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.678
	CNS0095598	Silvery flower (diploied) 1	0.481
	CNS0095599	Silvery flower (diploied) 2	0.311
	CNS0095600	Silvery flower (diploied) 3	0.259
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.013
	CNS0095603	Golden flower (diploid) 3	0.076
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.924
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.634
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.328
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.182
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.098
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.592
	CNS0095610	Silvery flower (tetraploid) 1	0.102
	CNS0095611	Silvery flower (tetraploid) 2	0.111
	CNS0095612	Silvery flower (tetraploid) 3	0.135
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	1.044
	CRR073298	Stem 2	0.716
	CRR073299	Stem 3	0.393
	CRR073300	Leaf 1	0.908
	CRR073301	Leaf 2	0.356
	CRR073302	Leaf 3	0.300
	CRR073303	Juvenile bud 1	0.110
	CRR073304	Juvenile bud 2	1.046
	CRR073305	Juvenile bud 3	1.303
	CRR073306	Third green 1	0.077
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.475
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.813
	CRR073316	Gold flowering 2	0.131
	CRR073317	Gold flowering 3	0.147
	CRR073318	Tawny withering 1	0.272
	CRR073319	Tawny withering 2	0.042
	CRR073320	Tawny withering 3	1.253