Gene detail

Detail information of GWHGAAZE016507

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074464.1	0	PREDICTED: ent-kaurene oxidase, chloroplastic-like [Sesamum indicum]
Swissprot	tr\|Q93ZB2\|KO1_ARATH	3E-165	Ent-kaurene oxidase, chloroplastic
trEMBL	tr\|M5XS29\|M5XS29_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ24353.1}
TAIR10	AT5G25900.1	4E-135	GA requiring 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	77830242	77833561	-
GWHAAZE00000004	mRNA	77830242	77833561	-
GWHAAZE00000004	exon	77833523	77833561	-
GWHAAZE00000004	exon	77833186	77833347	-
GWHAAZE00000004	exon	77832023	77832408	-
GWHAAZE00000004	exon	77831222	77831531	-
GWHAAZE00000004	exon	77830242	77830553	-
GWHAAZE00000004	CDS	77833523	77833561	-
GWHAAZE00000004	CDS	77833186	77833347	-
GWHAAZE00000004	CDS	77832023	77832408	-
GWHAAZE00000004	CDS	77831222	77831531	-
GWHAAZE00000004	CDS	77830242	77830553	-

Transcript Sequence
>GWHTAAZE016527 ATGAAGGTCAGCAACAGAGTTCTTGCCGAGGCACGAACTGCAATGGTGACCAGATTCTCGTCAATATCAACAAGAAAGCTATCAAATGCATTAAAGATTCTCACTTCTGACAAATCCATGGTTGCTATGAGTGATTATGACGACTTCCACAAGTTGGTGAAACGAAATATCCTCACAAATATTTTGGGTCCAAATGCTCAGTCTCTGGGAAAAGATGTGGAATCCATTCACGTCGAGGAACTTGGTACAATGTTGTCGAAAGAGGAAATGTTTAAGGTTTTAGTGCTCGACCCAATGGAAGGCGCAATTGATGTGGATTGGAGAGATTTTTTCCCATACTTAAAATGGATTCCGAATAAAACTTTTGAAGAGAGAGTACAGCGGATGCATATCCGAAGGGAAGCGTTGATGACTGCTTTGATTAAGGAGCAGAAAAAACGGTTTGATTCGGGGGAGGAAATAAAGTGTTATCTTGACTTCTTGTTATCACAAGAGAAACAACTAACTGAGAAACAAATAATGATGTTGTTGTGGGAGGTTATTATCGAAACATCGGATACTATGTTGGTCGCAACCGAGTGGGCCTTTGGGTTTCGTAACCCATGTGCCCTCACTGACTTGAACCAGGTAAGGTTTGACCCATTTACATTGTTGGTATTGTTTATGCATGATTTTGATCTCTTCTTAGTTATTCTCCAACAGGAACATCTCTACCAGGAACTTCAAAGTGTGTGCGGGTCTAACAAGATTACAGAGGAAAATTTGTCTCAACTTCCATACTTGTGTGCTGTTTTCCATGAAACTTTGAGAATACATAGTCCTGTTCCGATAATTCCTCTTCGATACGTGCATGAGGATACGCAGATAGGAGGATACCACATTCCAGCTGGAAGTGAGATTGCTATAAATATTTATGGGTGTAACATGGACAACAAAGTGTGGGAGGATCCCGATGAGTGGAAACCCGAGAGATTCCTCGTGAAGAAAAACGATGCCATGGATTTACACAAGACAATGGCATTTGGGGGAGGGAAGAGAGTATGTGCAGGTGCCCTTGAAGCTTTCTTTGTCTCTTGTGTGACAATAGGCAGATTAATACAAGAATTTGAGTGGAAGCTTAAGGATGGAGAGGAAGATAATGTTGATACCCTTGGCCTCACCACACACAAACTCCACCCAATGCAAGCAATCCTAAAGCCGAGAATTTGA

Network for GWHGAAZE016507

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	105	197	4.60E-08
PF00067.23	p450	234	388	2.20E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04122	GA3, CYP701	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Diterpenoid biosynthesis	map00904

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0005506	molecular_function	iron ion binding
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.131
	SRR3591706	second leaf	0.415
	SRR3591707	mature leaf	0.287
	SRR3591708	Shoot apex	5.067
	SRR3591709	Stem	8.975
	SRR3591710	White floral bud	8.420
	SRR3591711	White flower	4.208
	SRR3591712	Green floral bud	2.040
	SRR3591713	Yellow flower	0.340
SRP173429	SRR8316895	Juvenile bud stage	2.864
	SRR8316896	Juvenile bud stage	2.733
	SRR8316897	Juvenile bud stage	0.660
	SRR8316894	Third green stage	1.595
	SRR8316900	Third green stage	3.351
	SRR8316901	Third green stage	2.848
	SRR8316898	Complete white stage	5.286
	SRR8316899	Complete white stage	7.721
	SRR8316903	Complete white stage	8.495
	SRR8316902	Silver flowering stage	3.410
	SRR8316904	Silver flowering stage	4.538
	SRR8316905	Silver flowering stage	1.476
	SRR8316906	Gold flowering stage	1.184
	SRR8316907	Gold flowering stage	1.963
	SRR8316908	Gold flowering stage	0.529
SRP132670	SRR6706286	Control	1.209
	SRR6706287	Light intensity 50%	1.580
	SRR6706288	Light intensity 20%	2.222
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.489
	CNS0095593	Slightly white alabastrum(diploid) 2	4.848
	CNS0095594	Slightly white alabastrum(diploid) 3	4.452
	CNS0095595	Whole white alabastrum(diploid) 2	5.261
	CNS0095596	Whole white alabastrum(diploid) 3	2.545
	CNS0095597	Whole white alabastrum(diploid) 4	2.859
	CNS0095598	Silvery flower (diploied) 1	5.723
	CNS0095599	Silvery flower (diploied) 2	6.705
	CNS0095600	Silvery flower (diploied) 3	6.426
	CNS0095601	Golden flower (diploid) 1	1.716
	CNS0095602	Golden flower (diploid) 2	1.045
	CNS0095603	Golden flower (diploid) 3	1.701
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.626
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.313
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.164
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.406
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.077
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.079
	CNS0095610	Silvery flower (tetraploid) 1	3.498
	CNS0095611	Silvery flower (tetraploid) 2	1.489
	CNS0095612	Silvery flower (tetraploid) 3	0.387
	CNS0095613	Golden flower (tetraploid) 1	0.020
	CNS0095614	Golden flower (tetraploid) 2	0.325
	CNS0095615	Golden flower (tetraploid) 3	0.056
CRA001975	CRR073297	Stem 1	2.851
	CRR073298	Stem 2	2.306
	CRR073299	Stem 3	2.066
	CRR073300	Leaf 1	3.458
	CRR073301	Leaf 2	3.647
	CRR073302	Leaf 3	2.057
	CRR073303	Juvenile bud 1	3.718
	CRR073304	Juvenile bud 2	2.470
	CRR073305	Juvenile bud 3	3.939
	CRR073306	Third green 1	1.912
	CRR073307	Third green 2	2.031
	CRR073308	Third green 3	3.937
	CRR073309	Second white 1	0.008
	CRR073310	Second white 2	0.002
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.146
	CRR073316	Gold flowering 2	1.045
	CRR073317	Gold flowering 3	0.944
	CRR073318	Tawny withering 1	3.894
	CRR073319	Tawny withering 2	3.636
	CRR073320	Tawny withering 3	5.931