Detail information of GWHGAAZE016503


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002284120.13.6007E-132PREDICTED: thylakoidal processing peptidase 1, chloroplastic [Vitis vinifera]
Swissprottr|Q9M9Z2|TPP2_ARATH5E-104Probable thylakoidal processing peptidase 2, chloroplastic (Precursor)
trEMBLtr|A5AT48|A5AT48_VITVI1E-132Putative uncharacterized protein {ECO:0000313|EMBL:CAN78280.1}
TAIR10AT1G06870.12E-85Peptidase S24/S26A/S26B/S26C family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7775782677762930-
GWHAAZE00000004mRNA7775782677762930-
GWHAAZE00000004exon7775782677757974-
GWHAAZE00000004exon7775869377758760-
GWHAAZE00000004exon7775908477759152-
GWHAAZE00000004exon7775925177759319-
GWHAAZE00000004exon7776226677762448-
GWHAAZE00000004exon7776252977762930-
GWHAAZE00000004CDS7776252977762930-
GWHAAZE00000004CDS7776226677762448-
GWHAAZE00000004CDS7775925177759319-
GWHAAZE00000004CDS7775908477759152-
GWHAAZE00000004CDS7775869377758760-
GWHAAZE00000004CDS7775785477757974-
GWHAAZE00000004three_prime_UTR7775782677757853-
Transcript Sequence

Network for GWHGAAZE016503

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10502.10Peptidase_S261532426.60E-20
PF10502.10Peptidase_S262432813.40E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03100lepB Protein export map03060

Gene Ontology

GO term OntologyName
GO:0006508biological_processproteolysis
GO:0016021cellular_componentintegral component of membrane
GO:0016020cellular_componentmembrane
GO:0008236molecular_functionserine-type peptidase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.801
SRR3591706second leaf23.270
SRR3591707mature leaf25.947
SRR3591708Shoot apex31.972
SRR3591709Stem56.254
SRR3591710White floral bud51.094
SRR3591711White flower79.477
SRR3591712Green floral bud54.676
SRR3591713Yellow flower94.255
SRP173429 SRR8316895Juvenile bud stage 67.972
SRR8316896Juvenile bud stage 78.112
SRR8316897Juvenile bud stage 56.306
SRR8316894Third green stage 20.859
SRR8316900Third green stage 64.178
SRR8316901Third green stage 70.639
SRR8316898Complete white stage 31.663
SRR8316899Complete white stage 80.975
SRR8316903Complete white stage 47.992
SRR8316902Silver flowering stage55.013
SRR8316904Silver flowering stage69.684
SRR8316905Silver flowering stage42.189
SRR8316906Gold flowering stage 146.605
SRR8316907Gold flowering stage 117.529
SRR8316908Gold flowering stage 140.648
SRP132670SRR6706286Control49.096
SRR6706287Light intensity 50%52.985
SRR6706288Light intensity 20%54.596
CNP0000432CNS0095592Slightly white alabastrum(diploid) 149.488
CNS0095593Slightly white alabastrum(diploid) 261.209
CNS0095594Slightly white alabastrum(diploid) 356.932
CNS0095595Whole white alabastrum(diploid) 260.124
CNS0095596Whole white alabastrum(diploid) 341.238
CNS0095597Whole white alabastrum(diploid) 439.415
CNS0095598Silvery flower (diploied) 142.777
CNS0095599Silvery flower (diploied) 292.202
CNS0095600Silvery flower (diploied) 394.675
CNS0095601Golden flower (diploid) 161.129
CNS0095602Golden flower (diploid) 2101.294
CNS0095603Golden flower (diploid) 3101.063
CNS0095604Slightly white alabastrum(tetraploid) 141.764
CNS0095605Slightly white alabastrum(tetraploid) 237.136
CNS0095606Slightly white alabastrum(tetraploid) 351.298
CNS0095607Whole white alabastrum(tetraploid) 130.197
CNS0095608Whole white alabastrum(tetraploid) 223.446
CNS0095609Whole white alabastrum(tetraploid) 347.112
CNS0095610Silvery flower (tetraploid) 169.545
CNS0095611Silvery flower (tetraploid) 271.420
CNS0095612Silvery flower (tetraploid) 385.140
CNS0095613Golden flower (tetraploid) 172.550
CNS0095614Golden flower (tetraploid) 280.626
CNS0095615Golden flower (tetraploid) 386.200
CRA001975CRR073297Stem 147.227
CRR073298Stem 243.333
CRR073299Stem 345.094
CRR073300Leaf 148.589
CRR073301Leaf 248.421
CRR073302Leaf 346.438
CRR073303Juvenile bud 155.820
CRR073304Juvenile bud 246.994
CRR073305Juvenile bud 363.163
CRR073306Third green 1110.779
CRR073307Third green 291.371
CRR073308Third green 389.123
CRR073309Second white 1114.922
CRR073310Second white 292.154
CRR073311Second white 383.496
CRR073312Silver flowering 1117.903
CRR073313Silver flowering 2119.423
CRR073314Silver flowering 391.278
CRR073315Gold flowering 122.551
CRR073316Gold flowering 241.985
CRR073317Gold flowering 332.671
CRR073318Tawny withering 154.418
CRR073319Tawny withering 268.342
CRR073320Tawny withering 357.391