Gene detail

Detail information of GWHGAAZE016479

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG00964.1	5.913E-138	Chlorophyll a-b binding P4, chloroplastic [Gossypium arboreum]
Swissprot	tr\|P27521\|CA4_ARATH	9E-66	Chlorophyll a-b binding protein 4, chloroplastic (Precursor)
trEMBL	tr\|A0A061FAU5\|A0A061FAU5_THECC	5E-138	Light-harvesting complex I protein Lhca5 isoform 1 {ECO:0000313\|EMBL:EOY14470.1}
TAIR10	AT1G45474.2	7E-84	photosystem I light harvesting complex gene 5

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	77317877	77319834	+
GWHAAZE00000004	mRNA	77317877	77319834	+
GWHAAZE00000004	exon	77317877	77318112	+
GWHAAZE00000004	exon	77318226	77318362	+
GWHAAZE00000004	exon	77318639	77318735	+
GWHAAZE00000004	exon	77318990	77319094	+
GWHAAZE00000004	exon	77319301	77319389	+
GWHAAZE00000004	exon	77319692	77319834	+
GWHAAZE00000004	CDS	77317877	77318112	+
GWHAAZE00000004	CDS	77318226	77318362	+
GWHAAZE00000004	CDS	77318639	77318735	+
GWHAAZE00000004	CDS	77318990	77319094	+
GWHAAZE00000004	CDS	77319301	77319389	+
GWHAAZE00000004	CDS	77319692	77319834	+

Transcript Sequence
>GWHTAAZE016499 ATGCAGGCTGCAGTTGGAAGAGGAATTCAAATAATGGCATGCTCTGTTTCTTCTTCATCTGTCTTACTTGTAAAGAAGAATAACATCTTCATAAACAGAAGAAGTACAAATAGTACATCATTTGGTACAAGTAGAAGAGCACCTTCTCCACCTTACTCTTCTTCAGTTCTGGTTCGAGCACAACAACGACCCACGTGGCTTCCTGGCCTCGACCCCCCTTCTTATCTCGATGGAACTTTGGCTGGAGATTATGGGTTCGATCCGCTTGGACTAGGAGAGGATCCTAAGAGCTTGAAGTGGTACGTACAAGCTGAACTGGTTCATGCTCGCTTTGCTATGGCTGGAGTTGCTGGAATTCTCTTTACCGATGTAAGAACGAGTAATTTGCCCATATGGTACGAAGCCGGTGCCACTAAATTTGACTTTGCTAGCACTAGAACTCTCCTCTTCGTCCAGTTTCTCTTGATGGGATTTGTCGAAACCAAGAGGTACATGGATTTCACTAATCCAGGATCTCAAGCCAAAGAGGGATCCTTTTTTGGGTTGGAGCCTGCACTTGAAGGACTAGAACCTGGATACCCAGGAGGTCCATTGCTAAATCCTCTAGGACTTGCCAAAGATGCGGAAAGTGCGAAAGAGTGGAAACTTAAGGAGATTAAAAATGGACGGCTAGCAATGGTGGCCATGCTAGGGTTTTTTGTGCAGGCTTCAGTGACACATGCAGGTCCCATTGACAACTTAATGGAGCACCTCTCTAATCCATGGCACAAAACTATTATTCAGACTCTTGCTGGATCTGGTCCTTGA

Network for GWHGAAZE016479

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	72	236	4.60E-49

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08911	LHCA5	Metabolic pathways	map01100
K08911	LHCA5	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.722
	SRR3591706	second leaf	179.489
	SRR3591707	mature leaf	134.895
	SRR3591708	Shoot apex	59.208
	SRR3591709	Stem	10.208
	SRR3591710	White floral bud	2.285
	SRR3591711	White flower	1.963
	SRR3591712	Green floral bud	1.702
	SRR3591713	Yellow flower	0.550
SRP173429	SRR8316895	Juvenile bud stage	4.892
	SRR8316896	Juvenile bud stage	6.543
	SRR8316897	Juvenile bud stage	8.732
	SRR8316894	Third green stage	2.750
	SRR8316900	Third green stage	7.839
	SRR8316901	Third green stage	5.391
	SRR8316898	Complete white stage	0.921
	SRR8316899	Complete white stage	5.235
	SRR8316903	Complete white stage	2.118
	SRR8316902	Silver flowering stage	0.336
	SRR8316904	Silver flowering stage	0.373
	SRR8316905	Silver flowering stage	0.211
	SRR8316906	Gold flowering stage	0.305
	SRR8316907	Gold flowering stage	0.283
	SRR8316908	Gold flowering stage	2.247
SRP132670	SRR6706286	Control	9.683
	SRR6706287	Light intensity 50%	7.223
	SRR6706288	Light intensity 20%	6.928
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.378
	CNS0095593	Slightly white alabastrum(diploid) 2	2.997
	CNS0095594	Slightly white alabastrum(diploid) 3	2.965
	CNS0095595	Whole white alabastrum(diploid) 2	3.258
	CNS0095596	Whole white alabastrum(diploid) 3	4.591
	CNS0095597	Whole white alabastrum(diploid) 4	3.874
	CNS0095598	Silvery flower (diploied) 1	17.703
	CNS0095599	Silvery flower (diploied) 2	6.147
	CNS0095600	Silvery flower (diploied) 3	3.223
	CNS0095601	Golden flower (diploid) 1	11.743
	CNS0095602	Golden flower (diploid) 2	5.930
	CNS0095603	Golden flower (diploid) 3	5.056
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.427
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.891
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.647
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.806
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.256
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.615
	CNS0095610	Silvery flower (tetraploid) 1	1.445
	CNS0095611	Silvery flower (tetraploid) 2	1.720
	CNS0095612	Silvery flower (tetraploid) 3	0.778
	CNS0095613	Golden flower (tetraploid) 1	0.472
	CNS0095614	Golden flower (tetraploid) 2	0.977
	CNS0095615	Golden flower (tetraploid) 3	0.906
CRA001975	CRR073297	Stem 1	6.456
	CRR073298	Stem 2	4.679
	CRR073299	Stem 3	6.436
	CRR073300	Leaf 1	4.954
	CRR073301	Leaf 2	4.982
	CRR073302	Leaf 3	5.335
	CRR073303	Juvenile bud 1	2.176
	CRR073304	Juvenile bud 2	1.395
	CRR073305	Juvenile bud 3	4.136
	CRR073306	Third green 1	0.139
	CRR073307	Third green 2	0.029
	CRR073308	Third green 3	0.569
	CRR073309	Second white 1	0.447
	CRR073310	Second white 2	0.187
	CRR073311	Second white 3	0.066
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.087
	CRR073315	Gold flowering 1	62.878
	CRR073316	Gold flowering 2	78.441
	CRR073317	Gold flowering 3	49.252
	CRR073318	Tawny withering 1	8.389
	CRR073319	Tawny withering 2	13.601
	CRR073320	Tawny withering 3	11.078