Gene detail

Detail information of GWHGAAZE016476

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007017224.1	0	Kinase family protein isoform 1 [Theobroma cacao]
Swissprot	tr\|F4J6F6\|IREH1_ARATH	1E-75	Probable serine/threonine protein kinase IREH1 {ECO:0000305}
trEMBL	tr\|A0A061FIX7\|A0A061FIX7_THECC	0	Kinase family protein isoform 1 {ECO:0000313\|EMBL:EOY14449.1}
TAIR10	AT5G09890.1	0	Protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	77255592	77262858	+
GWHAAZE00000004	mRNA	77255592	77262858	+
GWHAAZE00000004	exon	77255592	77255797	+
GWHAAZE00000004	exon	77255984	77256158	+
GWHAAZE00000004	exon	77257921	77258004	+
GWHAAZE00000004	exon	77258202	77258443	+
GWHAAZE00000004	exon	77259172	77259379	+
GWHAAZE00000004	exon	77259506	77259670	+
GWHAAZE00000004	exon	77259963	77260094	+
GWHAAZE00000004	exon	77260202	77260349	+
GWHAAZE00000004	exon	77261234	77261274	+
GWHAAZE00000004	exon	77261427	77261505	+
GWHAAZE00000004	exon	77261745	77261801	+
GWHAAZE00000004	exon	77262800	77262858	+
GWHAAZE00000004	CDS	77255592	77255797	+
GWHAAZE00000004	CDS	77255984	77256158	+
GWHAAZE00000004	CDS	77257921	77258004	+
GWHAAZE00000004	CDS	77258202	77258443	+
GWHAAZE00000004	CDS	77259172	77259379	+
GWHAAZE00000004	CDS	77259506	77259670	+
GWHAAZE00000004	CDS	77259963	77260094	+
GWHAAZE00000004	CDS	77260202	77260349	+
GWHAAZE00000004	CDS	77261234	77261274	+
GWHAAZE00000004	CDS	77261427	77261505	+
GWHAAZE00000004	CDS	77261745	77261801	+
GWHAAZE00000004	CDS	77262800	77262858	+

Transcript Sequence
>GWHTAAZE016496 GTTTGGATCGGCGGTGAAATTATGGAAGGCGGTGACGGAACCGTGAGGTTGGGGACTCTGAACACGAAGCCCGATCGTTGCTTCAATTTGGAACCTGACGTCGCTGTTTCGTCGCCGGTTACTCGCCAGAAAGCCGCCGCTGCTAAGCAGTTCATTGAGAATCATTACAAGAACTACCTTCAAGGCCTCCAGGATCGCAAAGAAAGGCGTCGAGCACTACAAATGAAGGCACAGGAAGCACAGATATCGAGCGAGGAAGAAGAGGAGATGATGAGGAATTTGGAGAAGAAAGAGACGGAGTATATGAGGTTACAGAGGCATAAAATTGGAATTGACGACTTTGAACAATTGACCGTGATTGGCAAAGGTGCATTCGGCGAGGTTAGGCTATGTCGCGCTAAAAATACAGGAGAAATTTTTGCAATGAAGAAGCTGAAAAAATCGGAGATGCTTAGCCGTGGACAGGTTGAACATGTGCGATCTGAGAGGAATTTGCTGGTGGAGGTCGACAGCCGGTGTATTGTGAAACTCTTCTATTCCTTTCAAGATTCTGATTTCTTGTACCTTATCATGGAATATTTACCCGGTGGTGACATTATGACCTTACTGATGAGAGAAGATGTCCTTTCTGACGACGTTGCACGATTTTACATGGCTGAAAGTATCTTAGCTATACATTCAATTCACCAGCACAATTACATTCACAGGGACATAAAACCAGATAATCTCATACTGGACAAAAACGGCCATTTAAAACTCTCTGATTTTGGCTTGTGTAAACCCCTGGAGAATAAATTTTCATCAATATTGTTGGAAGATGAAGATTTTACAGCTCTGGAGCCCATAAGCGATACTGAAGGGCATTCAGATAGAGCTTCTTGGTTACAACAATGGAAACGTAACCGCCGTGCCCTGGCATATTCTACAGTTGGAACGCTTGACTATATGGCACCTGAAGTGCTTCTTAAAAAGGGATATGGAATGGAGTGTGACTGGTGGTCATTGGGGGCAATCATGTATGAAATGCTTGTTGGTTATCCTCCCTTCTGTTCTGATGATCCAAGGATAACTTGCCGCAAGATAATCAATTGGAAAACGTGCTTGAAATTCCCTGAGGAACCAAGAATATCAGACGAGGCAAAGGACTTGATCTGCCATTTGTTATGTGATGTCGAAACAAGGTTGGGGACCAGAGGAGTGGAAGAAATTAAGGCACATCCATGGTTTAGAGATGTTAAATGGGAAATGCTGTATGAAATGGAAGCCGCCTACAGACCTACTGTCACTGGAGACTTGGACACTCAGAATTTTGAGAAATTTCCTGAAGTGAGTACATTTTTTGACAGATTATTGGACAGATACGCTTCTTCAGCAGTACCAAGAGTGGGACCATGGCGAAAGATGTTGACGTCAAAAGATTCGAATTTTATTGGATACACTTTCAAGAAATCTGATATGATAAAATCAGTTGGAAATTCAGGTACAGTCAGGTCAAATGGATCCTCAAAGCCACCTCCGTCTGTAACATCCTTGTTTGGGCGGATAGACCTAAAAGAAACTGTACTGGCTGAGGAGGAACAGGAGGAGAAAAATTGA

Network for GWHGAAZE016476

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	114	409	3.20E-65

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_NDR

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0004674	molecular_function	protein serine/threonine kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	54.099
	SRR3591706	second leaf	16.546
	SRR3591707	mature leaf	14.204
	SRR3591708	Shoot apex	22.661
	SRR3591709	Stem	49.784
	SRR3591710	White floral bud	29.136
	SRR3591711	White flower	28.127
	SRR3591712	Green floral bud	41.823
	SRR3591713	Yellow flower	20.742
SRP173429	SRR8316895	Juvenile bud stage	25.179
	SRR8316896	Juvenile bud stage	31.978
	SRR8316897	Juvenile bud stage	15.521
	SRR8316894	Third green stage	15.464
	SRR8316900	Third green stage	50.242
	SRR8316901	Third green stage	46.771
	SRR8316898	Complete white stage	27.989
	SRR8316899	Complete white stage	74.853
	SRR8316903	Complete white stage	36.911
	SRR8316902	Silver flowering stage	31.497
	SRR8316904	Silver flowering stage	33.828
	SRR8316905	Silver flowering stage	15.465
	SRR8316906	Gold flowering stage	39.687
	SRR8316907	Gold flowering stage	41.028
	SRR8316908	Gold flowering stage	47.274
SRP132670	SRR6706286	Control	43.754
	SRR6706287	Light intensity 50%	54.168
	SRR6706288	Light intensity 20%	56.766
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.731
	CNS0095593	Slightly white alabastrum(diploid) 2	28.590
	CNS0095594	Slightly white alabastrum(diploid) 3	25.754
	CNS0095595	Whole white alabastrum(diploid) 2	26.471
	CNS0095596	Whole white alabastrum(diploid) 3	29.015
	CNS0095597	Whole white alabastrum(diploid) 4	25.172
	CNS0095598	Silvery flower (diploied) 1	28.007
	CNS0095599	Silvery flower (diploied) 2	21.126
	CNS0095600	Silvery flower (diploied) 3	43.439
	CNS0095601	Golden flower (diploid) 1	18.978
	CNS0095602	Golden flower (diploid) 2	26.549
	CNS0095603	Golden flower (diploid) 3	30.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.586
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.369
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.388
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.710
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.171
	CNS0095609	Whole white alabastrum(tetraploid) 3	38.652
	CNS0095610	Silvery flower (tetraploid) 1	46.280
	CNS0095611	Silvery flower (tetraploid) 2	37.420
	CNS0095612	Silvery flower (tetraploid) 3	65.196
	CNS0095613	Golden flower (tetraploid) 1	19.233
	CNS0095614	Golden flower (tetraploid) 2	30.603
	CNS0095615	Golden flower (tetraploid) 3	13.747
CRA001975	CRR073297	Stem 1	58.725
	CRR073298	Stem 2	52.733
	CRR073299	Stem 3	40.365
	CRR073300	Leaf 1	73.547
	CRR073301	Leaf 2	64.789
	CRR073302	Leaf 3	64.997
	CRR073303	Juvenile bud 1	63.907
	CRR073304	Juvenile bud 2	54.707
	CRR073305	Juvenile bud 3	72.064
	CRR073306	Third green 1	71.076
	CRR073307	Third green 2	63.507
	CRR073308	Third green 3	60.314
	CRR073309	Second white 1	29.601
	CRR073310	Second white 2	44.963
	CRR073311	Second white 3	38.971
	CRR073312	Silver flowering 1	17.131
	CRR073313	Silver flowering 2	11.947
	CRR073314	Silver flowering 3	9.935
	CRR073315	Gold flowering 1	14.754
	CRR073316	Gold flowering 2	22.055
	CRR073317	Gold flowering 3	9.335
	CRR073318	Tawny withering 1	37.921
	CRR073319	Tawny withering 2	37.908
	CRR073320	Tawny withering 3	39.283