Gene detail

Detail information of GWHGAAZE016474

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDY17109.1	1.87603E-64	BnaC06g00420D [Brassica napus]
Swissprot	tr\|Q9M7Q5\|AI5L4_ARATH	3E-47	ABSCISIC ACID-INSENSITIVE 5-like protein 4
trEMBL	tr\|A0A078FVJ7\|A0A078FVJ7_BRANA	7E-65	BnaC06g00420D protein {ECO:0000313\|EMBL:CDY17109.1}
TAIR10	AT1G45249.2	6E-24	abscisic acid responsive elements-binding factor 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	77211084	77212073	-
GWHAAZE00000004	mRNA	77211084	77212073	-
GWHAAZE00000004	exon	77211775	77212073	-
GWHAAZE00000004	exon	77211084	77211492	-
GWHAAZE00000004	CDS	77211775	77212073	-
GWHAAZE00000004	CDS	77211084	77211492	-

Transcript Sequence
>GWHTAAZE016494 ATGAACATGGATGAGTTATTAAAGAACATTTGGAGTGCTGAGGAGACTCAAACCATGGGGTCTGCGAATACTGGTGTGCAACAAGGGGTTGCACCTGGACCTGGAGGGTACCTGCAGAAGCAGGGCTCATTAACTTTACCCAGAACACTTAGCCAAAAGACAGTCGATGAAGTTTGGAGAGATATGTCCAATGGAGGGAAGGATGTGAGTGGTTTCGGGGGATTAAATTTGCAGCAGAGGCAACAGACTTTAGGAGAGATGACTCTTGAAGAATTCTTGGTGAAAGCTGGGGTAGTGAGACAACTTTTACCGAAGCGACCTACTATGACTTACGCTTCTCCAATGCCTATACCAATCACTGCTCAGTTAGGTACCCCGGGAACTAGAGGTGGGATCATGGGTATTTCAGATTCGGGGCTGAATAGTAGTTTGGCTCAGAATGTTGGACTACAAGGTGGAGGGACTGGAAGGGTAGGTGGTGGAGGTATTGGGGCTGTAACTGTCGCAGCAGCAGCTTCGCCAGTAGTTTCTTCAAATGGATTTGGAAAGAGTAATGGGGATATATCTTCAGTGTCACCAGTTCCTTATGTGTTTAATGGAGGTTTAAGGGGAAGGAAAGGTAACGGTGTGGAGAAGGTTGTCGAAAGGAGGCAGAGGAGAATGATAAAGAATAGAGAGTCGGCTGCAAGATCACGAGCTCGTAAACAG

Network for GWHGAAZE016474

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14432	ABF	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.113
	SRR3591706	second leaf	51.844
	SRR3591707	mature leaf	96.295
	SRR3591708	Shoot apex	61.710
	SRR3591709	Stem	97.565
	SRR3591710	White floral bud	3.723
	SRR3591711	White flower	10.319
	SRR3591712	Green floral bud	2.089
	SRR3591713	Yellow flower	8.691
SRP173429	SRR8316895	Juvenile bud stage	6.712
	SRR8316896	Juvenile bud stage	8.684
	SRR8316897	Juvenile bud stage	6.762
	SRR8316894	Third green stage	2.266
	SRR8316900	Third green stage	1.440
	SRR8316901	Third green stage	2.931
	SRR8316898	Complete white stage	0.459
	SRR8316899	Complete white stage	3.314
	SRR8316903	Complete white stage	1.475
	SRR8316902	Silver flowering stage	0.939
	SRR8316904	Silver flowering stage	1.775
	SRR8316905	Silver flowering stage	0.688
	SRR8316906	Gold flowering stage	2.431
	SRR8316907	Gold flowering stage	2.232
	SRR8316908	Gold flowering stage	4.023
SRP132670	SRR6706286	Control	6.072
	SRR6706287	Light intensity 50%	4.241
	SRR6706288	Light intensity 20%	4.565
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.086
	CNS0095593	Slightly white alabastrum(diploid) 2	2.638
	CNS0095594	Slightly white alabastrum(diploid) 3	6.286
	CNS0095595	Whole white alabastrum(diploid) 2	2.966
	CNS0095596	Whole white alabastrum(diploid) 3	1.267
	CNS0095597	Whole white alabastrum(diploid) 4	2.985
	CNS0095598	Silvery flower (diploied) 1	15.009
	CNS0095599	Silvery flower (diploied) 2	7.973
	CNS0095600	Silvery flower (diploied) 3	3.065
	CNS0095601	Golden flower (diploid) 1	14.916
	CNS0095602	Golden flower (diploid) 2	10.282
	CNS0095603	Golden flower (diploid) 3	10.243
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.044
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.729
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.019
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.059
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.436
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.485
	CNS0095610	Silvery flower (tetraploid) 1	8.080
	CNS0095611	Silvery flower (tetraploid) 2	7.998
	CNS0095612	Silvery flower (tetraploid) 3	5.728
	CNS0095613	Golden flower (tetraploid) 1	12.567
	CNS0095614	Golden flower (tetraploid) 2	16.358
	CNS0095615	Golden flower (tetraploid) 3	5.509
CRA001975	CRR073297	Stem 1	16.963
	CRR073298	Stem 2	12.034
	CRR073299	Stem 3	9.911
	CRR073300	Leaf 1	4.487
	CRR073301	Leaf 2	7.172
	CRR073302	Leaf 3	1.764
	CRR073303	Juvenile bud 1	1.354
	CRR073304	Juvenile bud 2	0.437
	CRR073305	Juvenile bud 3	1.930
	CRR073306	Third green 1	1.998
	CRR073307	Third green 2	0.376
	CRR073308	Third green 3	1.811
	CRR073309	Second white 1	2.498
	CRR073310	Second white 2	2.892
	CRR073311	Second white 3	4.244
	CRR073312	Silver flowering 1	5.028
	CRR073313	Silver flowering 2	5.261
	CRR073314	Silver flowering 3	6.424
	CRR073315	Gold flowering 1	33.855
	CRR073316	Gold flowering 2	36.262
	CRR073317	Gold flowering 3	19.757
	CRR073318	Tawny withering 1	42.533
	CRR073319	Tawny withering 2	37.107
	CRR073320	Tawny withering 3	38.568