Gene detail

Detail information of GWHGAAZE016452

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007226962.1	hypothetical protein PRUPE_ppa002618mg [Prunus persica]
Swissprot	tr\|Q9FXA2\|PABP8_ARATH	Polyadenylate-binding protein 8
trEMBL	tr\|M5XRJ2\|M5XRJ2_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ28161.1}
TAIR10	AT4G34110.1	poly(A) binding protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	76879763	76886328	+
GWHAAZE00000004	mRNA	76879763	76886328	+
GWHAAZE00000004	exon	76879763	76879994	+
GWHAAZE00000004	exon	76881051	76881169	+
GWHAAZE00000004	exon	76881586	76881754	+
GWHAAZE00000004	exon	76881921	76882243	+
GWHAAZE00000004	exon	76882611	76882688	+
GWHAAZE00000004	exon	76882764	76882853	+
GWHAAZE00000004	exon	76883257	76883394	+
GWHAAZE00000004	exon	76884104	76884274	+
GWHAAZE00000004	exon	76884550	76884744	+
GWHAAZE00000004	exon	76886065	76886328	+
GWHAAZE00000004	CDS	76879763	76879994	+
GWHAAZE00000004	CDS	76881051	76881169	+
GWHAAZE00000004	CDS	76881586	76881754	+
GWHAAZE00000004	CDS	76881921	76882243	+
GWHAAZE00000004	CDS	76882611	76882688	+
GWHAAZE00000004	CDS	76882764	76882853	+
GWHAAZE00000004	CDS	76883257	76883394	+
GWHAAZE00000004	CDS	76884104	76884274	+
GWHAAZE00000004	CDS	76884550	76884744	+
GWHAAZE00000004	CDS	76886065	76886328	+

Transcript Sequence
>GWHTAAZE016472 ATGTCGCAGCAAATTCAGATGCAGAATGGTGTGGCGGTTAATGCCAGTGGAGCGAATCAGTTCGTGACGACGTCGTTGTACGTTGGGGACCTTGACTGGAACGTGACCGATTCGCAGCTTTATGATCTGTTTAATCAAGTCGGTCAGGTTGTGTCTGTTAGGGTTTGTAGGGACTTGAGCACTCGCAGATCTCTCGGTTATGGATATGTTAACTATAGTAATCCTCAAGATGCGGCAAGGGCAATTGAAGTATTGAACTTTACTCCTCTTAATGGCAAGTCAATTAGAATTATGTATTCCCATCGGGACCCAAGTATTCGTAAGAGTGGAACAGCAAATATATTTATCAAGAACTTGGACAAGGCAATTGACAACAAAGCATTACATGATACTTTTTCAAGCTTTGGCAGCATTCTATCCTGCAAGATTGCTACCGATCCTTCTGGCCAGTCTAAAGGCTATGGGTTTGTGCAATTCGATAACGAAGAATCTGCTCAAAATGCTATAGATAAATTAAATGTTACCAGTGTCGTAGTAATGAAGGATGCAGATGGAAAATCTAAGTGTTTTGGGTTTATCAACTTTGATAATCCCGATGATGCTGCTAAAGCCGTTGAAGATTTAAACGGTAAAAAAATTGATGACAAGGAGTGGTATGTTGGGAAGGCCCAGAAGAAGTCGGAAAGGGAGCTTGAACTAAAAAGTCGTTTCGAGCAGAGTACAAAGGAAGCAGTAGACAAGTTTCAAGGGGTGAATTTGTATATCAAAAACTTGGATGATAGCATTGATGATGACAAACTCAAGGAATTGTTCTCAGAGTTTGGTACAATTACATCATGCAAGGTCATGCGTGACCCTACTGGAATTAGCAGGGGTTCTGGATTTGTTGCATTTTCAACATCTGAAGAAGCTTCTCGAACTCTTGCTGAGATGAATGGGAAAATGGTTGTTAGTAAACCACTTTATGTTGCAATTGCACAGCGGAAAGAAGAGAGAAGAGCAAGGTTGCAGGCACAGTTTTCTCAAATGAGGCCAGTTGCAATGGCCCCTTCGCTTGCTCCTCGCGTGCCAATGTACCCCCCTGGTGCTCCTGGTATCGGTCAGCAACTATTTTATGGGCAGGCACCTCCTGCTATGATCCCTCCCCAGGCTGGATTTGGCTACCAACAGCAGCTTGTTCCTGGAATGAGGCCGGGTGGAGCCCCAATGCCAAACTTTTTTGTGCCTCTCGTTCAGCAAGGTCAGCGCCCTGGTGGGAGACGGGGAGCAGCAGGCCCTGTGCAACCCACCCAGCAACCAGTGCCCCTCTTGCAGCAGCAGATGGTACCAAGGGGACGGGTGTATCGTTATCCTCCTGGCAGGAACGTGGCAGATGGGACGATGTCTGGAGGCATGCTTCCTGTTCCGTATGATATGACTGGTATGCTTCCTCGAGATACTGCAGTGGGACAGCCTATGCCTATTACAGCCTTGGCTTCTGCCCTTGCCAATGCTCCAACCGAGCAGCAGAGGACGATGTTGGGAGAGAACTTGTACCCGCTCGTTGACCAACTGGAGCATGAGCATGCCGCCAAGGTGACAGGGATGCTGCTGGAAATGGACCAAACAGAGGTCTTGCACTTGCTTGAATCCCCAGACGCATTGAAAGCAAAAGTAGCTGAGGCAATGGATGTCCTTAGGAACGTTCGACAGCAGCAGCAGCAGCAGCAGCAGGAGGCGGCCAATTCCCCTGCTGACCAGCTAGCTTCACTTTCTTTAAATGACAACCTTGTCTCGTAA

Network for GWHGAAZE016452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	26	96	2.30E-19
PF00076.23	RRM_1	114	173	6.80E-19
PF00076.23	RRM_1	174	218	5.90E-12
PF00076.23	RRM_1	253	321	3.10E-19
PF00658.19	PABP	493	559	3.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13126	PABPC	RNA transport	map03013
		mRNA surveillance pathway	map03015
		RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	111.352
	SRR3591706	second leaf	51.799
	SRR3591707	mature leaf	67.344
	SRR3591708	Shoot apex	111.170
	SRR3591709	Stem	68.604
	SRR3591710	White floral bud	88.062
	SRR3591711	White flower	82.064
	SRR3591712	Green floral bud	83.476
	SRR3591713	Yellow flower	73.913
SRP173429	SRR8316895	Juvenile bud stage	83.522
	SRR8316896	Juvenile bud stage	130.546
	SRR8316897	Juvenile bud stage	52.519
	SRR8316894	Third green stage	36.850
	SRR8316900	Third green stage	94.700
	SRR8316901	Third green stage	103.787
	SRR8316898	Complete white stage	26.922
	SRR8316899	Complete white stage	77.802
	SRR8316903	Complete white stage	41.065
	SRR8316902	Silver flowering stage	37.648
	SRR8316904	Silver flowering stage	45.769
	SRR8316905	Silver flowering stage	21.234
	SRR8316906	Gold flowering stage	79.151
	SRR8316907	Gold flowering stage	75.671
	SRR8316908	Gold flowering stage	75.387
SRP132670	SRR6706286	Control	75.679
	SRR6706287	Light intensity 50%	75.246
	SRR6706288	Light intensity 20%	78.662
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	142.530
	CNS0095593	Slightly white alabastrum(diploid) 2	114.104
	CNS0095594	Slightly white alabastrum(diploid) 3	169.212
	CNS0095595	Whole white alabastrum(diploid) 2	110.865
	CNS0095596	Whole white alabastrum(diploid) 3	124.553
	CNS0095597	Whole white alabastrum(diploid) 4	113.543
	CNS0095598	Silvery flower (diploied) 1	85.084
	CNS0095599	Silvery flower (diploied) 2	76.033
	CNS0095600	Silvery flower (diploied) 3	123.834
	CNS0095601	Golden flower (diploid) 1	91.757
	CNS0095602	Golden flower (diploid) 2	108.736
	CNS0095603	Golden flower (diploid) 3	108.944
	CNS0095604	Slightly white alabastrum(tetraploid) 1	171.471
	CNS0095605	Slightly white alabastrum(tetraploid) 2	175.405
	CNS0095606	Slightly white alabastrum(tetraploid) 3	167.126
	CNS0095607	Whole white alabastrum(tetraploid) 1	151.214
	CNS0095608	Whole white alabastrum(tetraploid) 2	140.009
	CNS0095609	Whole white alabastrum(tetraploid) 3	158.988
	CNS0095610	Silvery flower (tetraploid) 1	158.324
	CNS0095611	Silvery flower (tetraploid) 2	145.651
	CNS0095612	Silvery flower (tetraploid) 3	172.440
	CNS0095613	Golden flower (tetraploid) 1	118.939
	CNS0095614	Golden flower (tetraploid) 2	148.312
	CNS0095615	Golden flower (tetraploid) 3	99.356
CRA001975	CRR073297	Stem 1	109.946
	CRR073298	Stem 2	99.698
	CRR073299	Stem 3	84.452
	CRR073300	Leaf 1	103.035
	CRR073301	Leaf 2	93.638
	CRR073302	Leaf 3	69.331
	CRR073303	Juvenile bud 1	72.727
	CRR073304	Juvenile bud 2	62.019
	CRR073305	Juvenile bud 3	73.872
	CRR073306	Third green 1	70.023
	CRR073307	Third green 2	62.639
	CRR073308	Third green 3	74.460
	CRR073309	Second white 1	45.923
	CRR073310	Second white 2	64.077
	CRR073311	Second white 3	48.268
	CRR073312	Silver flowering 1	50.568
	CRR073313	Silver flowering 2	58.159
	CRR073314	Silver flowering 3	50.455
	CRR073315	Gold flowering 1	71.725
	CRR073316	Gold flowering 2	86.235
	CRR073317	Gold flowering 3	40.266
	CRR073318	Tawny withering 1	110.141
	CRR073319	Tawny withering 2	98.803
	CRR073320	Tawny withering 3	138.911