Gene detail

Detail information of GWHGAAZE016436

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009604893.1	5.4794E-175	PREDICTED: probable WRKY transcription factor 7 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9STX0\|WRKY7_ARATH	1E-98	Probable WRKY transcription factor 7
trEMBL	tr\|A0A089X5B8\|A0A089X5B8_NICBE	6E-172	WRKY17 {ECO:0000313\|EMBL:AIR74899.1}
TAIR10	AT4G24240.1	1E-64	WRKY DNA-binding protein 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	76646207	76647656	+
GWHAAZE00000004	mRNA	76646207	76647656	+
GWHAAZE00000004	exon	76646207	76646970	+
GWHAAZE00000004	exon	76647065	76647190	+
GWHAAZE00000004	exon	76647494	76647656	+
GWHAAZE00000004	CDS	76646207	76646970	+
GWHAAZE00000004	CDS	76647065	76647190	+
GWHAAZE00000004	CDS	76647494	76647656	+

Transcript Sequence
>GWHTAAZE016456 ATGGCCGTTGAGCTAATGACAGGATATAGTAACAACAATTTCATAAACAAAATGGAGGAATCTGCAGTACAAGAAGCTGCTGCAGCTGGCCTAAAAAGCGTCGAGAATCTCATCAGATTACTCTCACGATCTCAAGAACAACACCTACAAAAGACGCAACAACAAAATCCTAGTTTTACTCCAATGGAGTCCAACTCCGATTACAGAGTCGTTGCCGATGTTGCCGTAAACAAATTCAGAAAATTCATTTCGTTACTGGACCGATCCAGAACAGGCCACGCTCGGTTCCGTAGAGGTCCGGTACCTAACCAACCTAATGAGAATAATAGCCTACCGGACCGCGATGTTCCGATTCCGATTCAGATTCAGAATCAGAATCAGAATCAGAATCAAGGACCGGTTTCAAGTGTTCCTAAGGTTTATTGTCCAACGCCGATTCAGCGTTTACCTCCGCTACCTTACAATCACCACCATCAGTTGGTGAAAACAGGTTCGATAGAGAGGAAGGAACCTGCTACCACAATTAATTTTGCTTCGGCTACTGCTTCTCAGGCGAATTCGTTTATGTCTTCGCTTACAGGAGATACAGAGAGCTTACAGCCGTCGATGTCTTCCGGTTTCCAGATCACGAATCTGTCACAGGTCTCGTCGGCTGGTCGACCTCCTCTTTCGTCGTCTTCGTTTAAGAGAAAGTGTAGTTCCATGGATGATTCTGCTGTTAAGTGCTCTGGTTCCTCCGGTCGATGCCATTGCCACAAAAAACGGAAATCAAGGATGAAGAAAGTAGTGAGAGTACCGGCGATAAGCATGAAGATGTCTGATATTCCACCGGACGATTACTCGTGGAGAAAGTACGGTCAAAAGCCGATCAAAGGTTCTCCTCATCCACGGGGGTACTACAAGTGCAGCAGCTTGAGAGGTTGTCCGGCACGCAAACACGTGGAGAGAGCACTAGACGATCCAACGATGCTGATCGTTACTTACGAGGGCGAGCACAGCCACTCTCACTCCGTGGCAGAATCACCTGCTGCGCTAGTCCTTGAATCATCATAG

Network for GWHGAAZE016436

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10533.10	Plant_zn_clust	229	274	4.60E-15
PF03106.16	WRKY	278	334	1.40E-25

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0043565	molecular_function	sequence-specific DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	74.373
	SRR3591706	second leaf	26.589
	SRR3591707	mature leaf	54.745
	SRR3591708	Shoot apex	62.730
	SRR3591709	Stem	166.700
	SRR3591710	White floral bud	41.401
	SRR3591711	White flower	82.245
	SRR3591712	Green floral bud	18.471
	SRR3591713	Yellow flower	76.374
SRP173429	SRR8316895	Juvenile bud stage	33.588
	SRR8316896	Juvenile bud stage	17.227
	SRR8316897	Juvenile bud stage	26.738
	SRR8316894	Third green stage	10.934
	SRR8316900	Third green stage	9.200
	SRR8316901	Third green stage	11.505
	SRR8316898	Complete white stage	3.434
	SRR8316899	Complete white stage	31.722
	SRR8316903	Complete white stage	6.970
	SRR8316902	Silver flowering stage	14.873
	SRR8316904	Silver flowering stage	20.388
	SRR8316905	Silver flowering stage	8.688
	SRR8316906	Gold flowering stage	43.608
	SRR8316907	Gold flowering stage	40.603
	SRR8316908	Gold flowering stage	72.988
SRP132670	SRR6706286	Control	17.531
	SRR6706287	Light intensity 50%	18.373
	SRR6706288	Light intensity 20%	15.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	29.007
	CNS0095593	Slightly white alabastrum(diploid) 2	25.145
	CNS0095594	Slightly white alabastrum(diploid) 3	35.340
	CNS0095595	Whole white alabastrum(diploid) 2	21.354
	CNS0095596	Whole white alabastrum(diploid) 3	5.034
	CNS0095597	Whole white alabastrum(diploid) 4	20.926
	CNS0095598	Silvery flower (diploied) 1	71.089
	CNS0095599	Silvery flower (diploied) 2	56.341
	CNS0095600	Silvery flower (diploied) 3	38.028
	CNS0095601	Golden flower (diploid) 1	71.032
	CNS0095602	Golden flower (diploid) 2	70.424
	CNS0095603	Golden flower (diploid) 3	70.713
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.842
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.987
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.508
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.979
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.297
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.183
	CNS0095610	Silvery flower (tetraploid) 1	27.728
	CNS0095611	Silvery flower (tetraploid) 2	15.892
	CNS0095612	Silvery flower (tetraploid) 3	20.924
	CNS0095613	Golden flower (tetraploid) 1	31.147
	CNS0095614	Golden flower (tetraploid) 2	52.706
	CNS0095615	Golden flower (tetraploid) 3	27.418
CRA001975	CRR073297	Stem 1	34.442
	CRR073298	Stem 2	27.977
	CRR073299	Stem 3	29.531
	CRR073300	Leaf 1	26.597
	CRR073301	Leaf 2	31.290
	CRR073302	Leaf 3	17.689
	CRR073303	Juvenile bud 1	22.701
	CRR073304	Juvenile bud 2	17.482
	CRR073305	Juvenile bud 3	24.631
	CRR073306	Third green 1	76.810
	CRR073307	Third green 2	54.367
	CRR073308	Third green 3	70.504
	CRR073309	Second white 1	163.277
	CRR073310	Second white 2	111.486
	CRR073311	Second white 3	136.321
	CRR073312	Silver flowering 1	216.867
	CRR073313	Silver flowering 2	208.762
	CRR073314	Silver flowering 3	158.608
	CRR073315	Gold flowering 1	50.229
	CRR073316	Gold flowering 2	74.207
	CRR073317	Gold flowering 3	56.737
	CRR073318	Tawny withering 1	96.238
	CRR073319	Tawny withering 2	196.235
	CRR073320	Tawny withering 3	118.885