Detail information of GWHGAAZE016421


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011074385.10PREDICTED: metal transporter Nramp2-like [Sesamum indicum]
Swissprottr|Q9C6B2|NRAM2_ARATH0Metal transporter Nramp2
trEMBLtr|W9RRM3|W9RRM3_9ROSA0Metal transporter Nramp2 {ECO:0000313|EMBL:EXC04828.1}
TAIR10AT1G47240.10NRAMP metal ion transporter 2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7612988776136175-
GWHAAZE00000004mRNA7612988776136175-
GWHAAZE00000004exon7613557776136175-
GWHAAZE00000004exon7613429176134427-
GWHAAZE00000004exon7613343476133909-
GWHAAZE00000004exon7613325676133348-
GWHAAZE00000004exon7613085476131070-
GWHAAZE00000004exon7612988776129996-
GWHAAZE00000004CDS7613557776136175-
GWHAAZE00000004CDS7613429176134427-
GWHAAZE00000004CDS7613343476133909-
GWHAAZE00000004CDS7613325676133348-
GWHAAZE00000004CDS7613085476131070-
GWHAAZE00000004CDS7612988776129996-
Transcript Sequence

Network for GWHGAAZE016421

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01566.19Nramp984054.80E-102
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K21398SLC11A2, DMT1, NRAMP2 Lysosome map04142
Ferroptosismap04216
Mineral absorptionmap04978

Gene Ontology

GO term OntologyName
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transmembrane transporter activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.528
SRR3591706second leaf6.409
SRR3591707mature leaf10.933
SRR3591708Shoot apex6.200
SRR3591709Stem20.782
SRR3591710White floral bud18.614
SRR3591711White flower24.364
SRR3591712Green floral bud12.359
SRR3591713Yellow flower27.181
SRP173429 SRR8316895Juvenile bud stage 7.747
SRR8316896Juvenile bud stage 9.678
SRR8316897Juvenile bud stage 4.081
SRR8316894Third green stage 4.097
SRR8316900Third green stage 12.159
SRR8316901Third green stage 14.349
SRR8316898Complete white stage 12.009
SRR8316899Complete white stage 23.698
SRR8316903Complete white stage 19.315
SRR8316902Silver flowering stage8.853
SRR8316904Silver flowering stage12.473
SRR8316905Silver flowering stage4.597
SRR8316906Gold flowering stage 17.820
SRR8316907Gold flowering stage 19.803
SRR8316908Gold flowering stage 18.253
SRP132670SRR6706286Control9.446
SRR6706287Light intensity 50%10.364
SRR6706288Light intensity 20%10.222
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.237
CNS0095593Slightly white alabastrum(diploid) 210.441
CNS0095594Slightly white alabastrum(diploid) 37.437
CNS0095595Whole white alabastrum(diploid) 29.295
CNS0095596Whole white alabastrum(diploid) 39.401
CNS0095597Whole white alabastrum(diploid) 410.462
CNS0095598Silvery flower (diploied) 16.472
CNS0095599Silvery flower (diploied) 28.186
CNS0095600Silvery flower (diploied) 316.613
CNS0095601Golden flower (diploid) 15.781
CNS0095602Golden flower (diploid) 218.087
CNS0095603Golden flower (diploid) 317.679
CNS0095604Slightly white alabastrum(tetraploid) 18.399
CNS0095605Slightly white alabastrum(tetraploid) 27.791
CNS0095606Slightly white alabastrum(tetraploid) 312.153
CNS0095607Whole white alabastrum(tetraploid) 111.707
CNS0095608Whole white alabastrum(tetraploid) 210.060
CNS0095609Whole white alabastrum(tetraploid) 310.750
CNS0095610Silvery flower (tetraploid) 114.296
CNS0095611Silvery flower (tetraploid) 210.887
CNS0095612Silvery flower (tetraploid) 318.840
CNS0095613Golden flower (tetraploid) 18.892
CNS0095614Golden flower (tetraploid) 210.950
CNS0095615Golden flower (tetraploid) 316.890
CRA001975CRR073297Stem 17.887
CRR073298Stem 25.346
CRR073299Stem 36.455
CRR073300Leaf 18.921
CRR073301Leaf 27.655
CRR073302Leaf 37.239
CRR073303Juvenile bud 19.955
CRR073304Juvenile bud 27.714
CRR073305Juvenile bud 311.256
CRR073306Third green 114.362
CRR073307Third green 29.803
CRR073308Third green 312.794
CRR073309Second white 123.679
CRR073310Second white 221.578
CRR073311Second white 327.209
CRR073312Silver flowering 127.542
CRR073313Silver flowering 231.098
CRR073314Silver flowering 326.765
CRR073315Gold flowering 11.441
CRR073316Gold flowering 23.190
CRR073317Gold flowering 33.195
CRR073318Tawny withering 18.460
CRR073319Tawny withering 213.166
CRR073320Tawny withering 37.534