Detail information of GWHGAAZE016412


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01216.11.83978E-49unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TYB0|A0A068TYB0_COFCA7E-50Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313|EMBL:CDP01216.1}
TAIR10AT5G43140.11E-36Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7602043976022202-
GWHAAZE00000004mRNA7602043976022202-
GWHAAZE00000004exon7602209876022202-
GWHAAZE00000004exon7602043976020669-
GWHAAZE00000004CDS7602209876022202-
GWHAAZE00000004CDS7602043976020669-
Transcript Sequence

Network for GWHGAAZE016412

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13348MPV17 Peroxisome map04146

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.764
SRR3591706second leaf11.759
SRR3591707mature leaf9.115
SRR3591708Shoot apex13.781
SRR3591709Stem14.790
SRR3591710White floral bud4.767
SRR3591711White flower9.409
SRR3591712Green floral bud7.779
SRR3591713Yellow flower4.549
SRP173429 SRR8316895Juvenile bud stage 4.902
SRR8316896Juvenile bud stage 7.584
SRR8316897Juvenile bud stage 3.499
SRR8316894Third green stage 2.994
SRR8316900Third green stage 9.183
SRR8316901Third green stage 8.939
SRR8316898Complete white stage 3.905
SRR8316899Complete white stage 13.145
SRR8316903Complete white stage 6.845
SRR8316902Silver flowering stage3.400
SRR8316904Silver flowering stage3.506
SRR8316905Silver flowering stage1.727
SRR8316906Gold flowering stage 5.308
SRR8316907Gold flowering stage 5.959
SRR8316908Gold flowering stage 3.857
SRP132670SRR6706286Control4.215
SRR6706287Light intensity 50%3.706
SRR6706288Light intensity 20%4.361
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.446
CNS0095593Slightly white alabastrum(diploid) 24.234
CNS0095594Slightly white alabastrum(diploid) 34.257
CNS0095595Whole white alabastrum(diploid) 25.547
CNS0095596Whole white alabastrum(diploid) 34.886
CNS0095597Whole white alabastrum(diploid) 44.550
CNS0095598Silvery flower (diploied) 12.862
CNS0095599Silvery flower (diploied) 23.820
CNS0095600Silvery flower (diploied) 36.936
CNS0095601Golden flower (diploid) 15.235
CNS0095602Golden flower (diploid) 23.930
CNS0095603Golden flower (diploid) 35.178
CNS0095604Slightly white alabastrum(tetraploid) 14.154
CNS0095605Slightly white alabastrum(tetraploid) 24.324
CNS0095606Slightly white alabastrum(tetraploid) 35.384
CNS0095607Whole white alabastrum(tetraploid) 16.667
CNS0095608Whole white alabastrum(tetraploid) 24.861
CNS0095609Whole white alabastrum(tetraploid) 32.968
CNS0095610Silvery flower (tetraploid) 15.582
CNS0095611Silvery flower (tetraploid) 25.879
CNS0095612Silvery flower (tetraploid) 34.349
CNS0095613Golden flower (tetraploid) 12.928
CNS0095614Golden flower (tetraploid) 24.687
CNS0095615Golden flower (tetraploid) 32.268
CRA001975CRR073297Stem 13.855
CRR073298Stem 23.663
CRR073299Stem 37.522
CRR073300Leaf 13.844
CRR073301Leaf 22.920
CRR073302Leaf 33.829
CRR073303Juvenile bud 12.909
CRR073304Juvenile bud 22.390
CRR073305Juvenile bud 34.525
CRR073306Third green 12.163
CRR073307Third green 20.148
CRR073308Third green 30.901
CRR073309Second white 11.063
CRR073310Second white 20.680
CRR073311Second white 31.245
CRR073312Silver flowering 11.225
CRR073313Silver flowering 20.510
CRR073314Silver flowering 31.965
CRR073315Gold flowering 14.863
CRR073316Gold flowering 210.058
CRR073317Gold flowering 36.021
CRR073318Tawny withering 14.467
CRR073319Tawny withering 29.868
CRR073320Tawny withering 31.986