Detail information of GWHGAAZE016411


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01216.12.81957E-24unnamed protein product [Coffea canephora]
trEMBLtr|A0A068TYB0|A0A068TYB0_COFCA1E-24Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313|EMBL:CDP01216.1}
TAIR10AT5G43140.11E-16Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7601604176016639-
GWHAAZE00000004mRNA7601604176016639-
GWHAAZE00000004exon7601604176016124-
GWHAAZE00000004exon7601656876016639-
GWHAAZE00000004CDS7601656876016639-
GWHAAZE00000004CDS7601604176016124-
Transcript Sequence

Network for GWHGAAZE016411

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04117.13Mpv17_PMP221395.30E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13348MPV17 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.205
SRR3591706second leaf13.300
SRR3591707mature leaf17.182
SRR3591708Shoot apex12.674
SRR3591709Stem20.977
SRR3591710White floral bud10.352
SRR3591711White flower8.281
SRR3591712Green floral bud13.752
SRR3591713Yellow flower4.995
SRP173429 SRR8316895Juvenile bud stage 2.755
SRR8316896Juvenile bud stage 7.755
SRR8316897Juvenile bud stage 5.072
SRR8316894Third green stage 3.078
SRR8316900Third green stage 8.454
SRR8316901Third green stage 9.788
SRR8316898Complete white stage 5.226
SRR8316899Complete white stage 14.582
SRR8316903Complete white stage 7.057
SRR8316902Silver flowering stage2.990
SRR8316904Silver flowering stage5.448
SRR8316905Silver flowering stage1.532
SRR8316906Gold flowering stage 8.643
SRR8316907Gold flowering stage 5.561
SRR8316908Gold flowering stage 6.362
SRP132670SRR6706286Control0.425
SRR6706287Light intensity 50%0.713
SRR6706288Light intensity 20%0.607
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.908
CNS0095593Slightly white alabastrum(diploid) 25.501
CNS0095594Slightly white alabastrum(diploid) 35.731
CNS0095595Whole white alabastrum(diploid) 26.159
CNS0095596Whole white alabastrum(diploid) 39.895
CNS0095597Whole white alabastrum(diploid) 46.609
CNS0095598Silvery flower (diploied) 16.059
CNS0095599Silvery flower (diploied) 24.951
CNS0095600Silvery flower (diploied) 36.352
CNS0095601Golden flower (diploid) 18.173
CNS0095602Golden flower (diploid) 27.935
CNS0095603Golden flower (diploid) 38.180
CNS0095604Slightly white alabastrum(tetraploid) 111.009
CNS0095605Slightly white alabastrum(tetraploid) 29.228
CNS0095606Slightly white alabastrum(tetraploid) 37.740
CNS0095607Whole white alabastrum(tetraploid) 110.621
CNS0095608Whole white alabastrum(tetraploid) 24.300
CNS0095609Whole white alabastrum(tetraploid) 36.362
CNS0095610Silvery flower (tetraploid) 110.304
CNS0095611Silvery flower (tetraploid) 25.791
CNS0095612Silvery flower (tetraploid) 34.966
CNS0095613Golden flower (tetraploid) 12.169
CNS0095614Golden flower (tetraploid) 28.479
CNS0095615Golden flower (tetraploid) 33.742
CRA001975CRR073297Stem 12.195
CRR073298Stem 21.943
CRR073299Stem 33.520
CRR073300Leaf 12.282
CRR073301Leaf 21.838
CRR073302Leaf 33.015
CRR073303Juvenile bud 12.063
CRR073304Juvenile bud 21.160
CRR073305Juvenile bud 33.933
CRR073306Third green 10.000
CRR073307Third green 20.104
CRR073308Third green 30.000
CRR073309Second white 12.057
CRR073310Second white 20.447
CRR073311Second white 30.000
CRR073312Silver flowering 10.444
CRR073313Silver flowering 20.173
CRR073314Silver flowering 30.119
CRR073315Gold flowering 12.602
CRR073316Gold flowering 27.153
CRR073317Gold flowering 33.449
CRR073318Tawny withering 11.426
CRR073319Tawny withering 24.361
CRR073320Tawny withering 33.423