Detail information of GWHGAAZE016378


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011098412.13.7047E-127PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Sesamum indicum]
Swissprottr|Q8W034|RNP1_ARATH2E-69Heterogeneous nuclear ribonucleoprotein 1
trEMBLtr|M1A1H0|M1A1H0_SOLTU1E-115Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400012586}
TAIR10AT4G14300.13E-54RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7526882275270952-
GWHAAZE00000004mRNA7526882275270952-
GWHAAZE00000004exon7526882275269679-
GWHAAZE00000004exon7527072875270952-
GWHAAZE00000004CDS7527072875270952-
GWHAAZE00000004CDS7526882275269679-
Transcript Sequence

Network for GWHGAAZE016378

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_19744.50E-15
PF00076.23RRM_11151811.60E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14411MSI mRNA surveillance pathway map03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf14.648
SRR3591706second leaf7.666
SRR3591707mature leaf6.596
SRR3591708Shoot apex28.491
SRR3591709Stem13.775
SRR3591710White floral bud8.510
SRR3591711White flower15.321
SRR3591712Green floral bud16.304
SRR3591713Yellow flower7.109
SRP173429 SRR8316895Juvenile bud stage 10.199
SRR8316896Juvenile bud stage 11.662
SRR8316897Juvenile bud stage 5.144
SRR8316894Third green stage 4.491
SRR8316900Third green stage 8.958
SRR8316901Third green stage 10.152
SRR8316898Complete white stage 0.933
SRR8316899Complete white stage 13.877
SRR8316903Complete white stage 2.991
SRR8316902Silver flowering stage1.835
SRR8316904Silver flowering stage2.642
SRR8316905Silver flowering stage0.687
SRR8316906Gold flowering stage 4.038
SRR8316907Gold flowering stage 4.571
SRR8316908Gold flowering stage 4.553
SRP132670SRR6706286Control11.329
SRR6706287Light intensity 50%9.873
SRR6706288Light intensity 20%9.349
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.706
CNS0095593Slightly white alabastrum(diploid) 214.494
CNS0095594Slightly white alabastrum(diploid) 39.611
CNS0095595Whole white alabastrum(diploid) 29.174
CNS0095596Whole white alabastrum(diploid) 35.994
CNS0095597Whole white alabastrum(diploid) 47.405
CNS0095598Silvery flower (diploied) 113.411
CNS0095599Silvery flower (diploied) 211.340
CNS0095600Silvery flower (diploied) 37.007
CNS0095601Golden flower (diploid) 18.452
CNS0095602Golden flower (diploid) 29.454
CNS0095603Golden flower (diploid) 38.347
CNS0095604Slightly white alabastrum(tetraploid) 19.524
CNS0095605Slightly white alabastrum(tetraploid) 210.460
CNS0095606Slightly white alabastrum(tetraploid) 320.768
CNS0095607Whole white alabastrum(tetraploid) 16.673
CNS0095608Whole white alabastrum(tetraploid) 24.844
CNS0095609Whole white alabastrum(tetraploid) 310.894
CNS0095610Silvery flower (tetraploid) 17.218
CNS0095611Silvery flower (tetraploid) 26.428
CNS0095612Silvery flower (tetraploid) 32.426
CNS0095613Golden flower (tetraploid) 14.618
CNS0095614Golden flower (tetraploid) 25.876
CNS0095615Golden flower (tetraploid) 34.140
CRA001975CRR073297Stem 15.335
CRR073298Stem 25.906
CRR073299Stem 35.398
CRR073300Leaf 13.657
CRR073301Leaf 23.379
CRR073302Leaf 33.094
CRR073303Juvenile bud 12.929
CRR073304Juvenile bud 22.240
CRR073305Juvenile bud 34.059
CRR073306Third green 10.167
CRR073307Third green 20.179
CRR073308Third green 30.361
CRR073309Second white 10.985
CRR073310Second white 21.169
CRR073311Second white 30.388
CRR073312Silver flowering 10.419
CRR073313Silver flowering 20.377
CRR073314Silver flowering 30.066
CRR073315Gold flowering 17.060
CRR073316Gold flowering 26.362
CRR073317Gold flowering 35.488
CRR073318Tawny withering 17.184
CRR073319Tawny withering 25.616
CRR073320Tawny withering 35.649