Gene detail

Detail information of GWHGAAZE016376

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002285467.2	0	PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Vitis vinifera]
Swissprot	tr\|Q38914\|ANT_ARATH	7E-160	AP2-like ethylene-responsive transcription factor ANT
trEMBL	tr\|F6H173\|F6H173_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45724.1}
TAIR10	AT4G37750.1	5E-129	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	75234936	75238756	-
GWHAAZE00000004	mRNA	75234936	75238756	-
GWHAAZE00000004	exon	75234936	75235561	-
GWHAAZE00000004	exon	75235971	75236047	-
GWHAAZE00000004	exon	75236234	75236284	-
GWHAAZE00000004	exon	75236502	75236575	-
GWHAAZE00000004	exon	75236776	75236864	-
GWHAAZE00000004	exon	75237175	75237257	-
GWHAAZE00000004	exon	75237547	75238168	-
GWHAAZE00000004	exon	75238519	75238756	-
GWHAAZE00000004	CDS	75238519	75238756	-
GWHAAZE00000004	CDS	75237547	75238168	-
GWHAAZE00000004	CDS	75237175	75237257	-
GWHAAZE00000004	CDS	75236776	75236864	-
GWHAAZE00000004	CDS	75236502	75236575	-
GWHAAZE00000004	CDS	75236234	75236284	-
GWHAAZE00000004	CDS	75235971	75236047	-
GWHAAZE00000004	CDS	75234936	75235561	-

Transcript Sequence
>GWHTAAZE016396 ATGAAATCAGATGCTTCTTCAGACCCTCTTAATCATCACTTCAATCATCAACTAACTCAACAGGCTTCCCCTGTTCCAACAAGCTACTTTCTCTCTCCTCCTCCTCAACTCAATACCTCCCCAATCTGCTATGAAGTTGGGCAAAATGGTAATTTCCACTCTTCCCTCTCCGTTATGCCTTTAAAGTCTGATGGGTCTCTTTGCATAATGGAAGCTCTCAACAGATCACACTCTCAAGGGATGGTGACAAATTCATCCCCAAAACTAGAGGACTTTCTAGGTGTAACAATGGCAGCCCATCAGTATGGAAGCCATGAGAGAGAAGCTCATCAAGCAATGGCTTTAAGCTTAGACAGCTTGTACTACCACCAACAAAACGGTGATGATGATCAACAAGAAGCCCACTTTAGGCCACAGGGAGATATGCAGCACCAGCACACATACTATACTGGCCTCCCTTGCTACATAACATCATCACCAGAGGAACAAGAACCCAACAACAAGGCTCATCAGATCTCTCCAATGCCCTTGAACTGGGCTACTGCAGGTGGTGGGTCCTACCACGAGGGGCTTGACCAGCAGGTGCACACCAGCATGGTGGATGATGGAGGTGCATCATCAGTGAGTTGTGGTGACTTGCAGTCTTTGACTTTGTCAATGAGCCCTGGGTCACAGTCTAGCTGTGTGACTGCCTCTAGGCAGATCTCGCCTACTGGGGGTCGGGGTGGGGCTGAGTGTGGTGGTGTGGCTATTGAAACCAAGAAGAGGGGCTCTGCTAAAATGGCTCAGAAGCAGCCTGTTCATAGGAAGTCCATTGACACTTTTGGCCAAAGAACGTCTCAATACAGAGGTGTCACAAGGCATAGATGGACTGGTAGATATGAAGCTCATTTATGGGACAATAGTTGCAAGAAGGAAGGGCAAACTAGGAAAGGAAGACAAGGTGGTTATGATATGGAAGAAAAAGCTGCAAGAGCCTATGATTGCGCTGCGCTCAAGTACTGGGGACCTTCTACTCATATCAACTTCCCGCTAGAAGACTACCATCAAGAGCTAGAGGACATGAAGAACATGAGCCGCCAGGAATATGTTGCACACTTGAGAAGGAAAAGTAGTGGGTTTTCGAGAGGGGCTTCAATGTATAGAGGAGTGACGAGGCACCATCAGCATGGAAGATGGCAGGCTCGGATCGGCCGGGTCGCAGGGAACAAGGACCTATACCTTGGGACATTCAGCACTCAAGAGGAGGCGGCCGAAGCATATGATATAGCTGCAATAAAATTCCGAGGGGTAAATGCGGTGACCAACTTCGACATAACAAGATATGACGTGGACAGAATCATGGCCAGCAACACCCTACTAGCCGGTGACCTGGCAAGGCGAAACAAACCCTGCGGGCCCACGTCTGAGGCCTTGATCACCTACAACGAGCTGCACAATAAGCCCGAGAACACCACCAATGGTCCAGCCTGGCAAATGGTATTATCCAATGAGTCCCCGCAGAATGCTTGTGTGGACTCGCTTCATGAGAAAACAATTAGTAATGTGCCTTACAGGCAATCTTTTTCATCTGCCATACAAGGCCTAATGGGGATTGATTCGGTGAATTCGGGCCATTTGATTGTTGATGAATCGTCAAAGATTGGGGGGGCTCACTTTTCGAACCCGTCTTCTTTGGTGACTAGCTTAAGCAGCTCGAGAGAAGCTAGCCCGGATAAGCCCAGCTTGGCAGCTAAGTTTATAAATGCTGGCTCAGCAGGGGTTGGCTCGTGGATAGGCTCATCAGCTCAGCTTAGGGCGGCTCAGGCTCCAGTCTCAATGGCTCACTTGCCAGTTTTTGCAGCTTGGAACGATAGTTGA

Network for GWHGAAZE016376

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	281	336	1.60E-09
PF00847.21	AP2	381	430	1.00E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.520
	SRR3591706	second leaf	4.774
	SRR3591707	mature leaf	4.123
	SRR3591708	Shoot apex	72.677
	SRR3591709	Stem	32.778
	SRR3591710	White floral bud	2.142
	SRR3591711	White flower	4.632
	SRR3591712	Green floral bud	1.104
	SRR3591713	Yellow flower	0.351
SRP173429	SRR8316895	Juvenile bud stage	3.381
	SRR8316896	Juvenile bud stage	2.281
	SRR8316897	Juvenile bud stage	0.452
	SRR8316894	Third green stage	1.055
	SRR8316900	Third green stage	0.094
	SRR8316901	Third green stage	0.095
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	2.057
	SRR8316903	Complete white stage	0.353
	SRR8316902	Silver flowering stage	0.029
	SRR8316904	Silver flowering stage	0.035
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.043
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.027
SRP132670	SRR6706286	Control	0.816
	SRR6706287	Light intensity 50%	0.846
	SRR6706288	Light intensity 20%	0.952
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.972
	CNS0095593	Slightly white alabastrum(diploid) 2	2.485
	CNS0095594	Slightly white alabastrum(diploid) 3	1.831
	CNS0095595	Whole white alabastrum(diploid) 2	2.451
	CNS0095596	Whole white alabastrum(diploid) 3	0.224
	CNS0095597	Whole white alabastrum(diploid) 4	1.776
	CNS0095598	Silvery flower (diploied) 1	19.843
	CNS0095599	Silvery flower (diploied) 2	12.768
	CNS0095600	Silvery flower (diploied) 3	2.491
	CNS0095601	Golden flower (diploid) 1	11.760
	CNS0095602	Golden flower (diploid) 2	2.980
	CNS0095603	Golden flower (diploid) 3	3.961
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.126
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.397
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.864
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.865
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.364
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	2.013
	CNS0095612	Silvery flower (tetraploid) 3	1.313
	CNS0095613	Golden flower (tetraploid) 1	0.109
	CNS0095614	Golden flower (tetraploid) 2	0.209
	CNS0095615	Golden flower (tetraploid) 3	0.075
CRA001975	CRR073297	Stem 1	7.037
	CRR073298	Stem 2	3.720
	CRR073299	Stem 3	11.426
	CRR073300	Leaf 1	0.536
	CRR073301	Leaf 2	0.554
	CRR073302	Leaf 3	0.710
	CRR073303	Juvenile bud 1	0.184
	CRR073304	Juvenile bud 2	0.124
	CRR073305	Juvenile bud 3	0.231
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.096
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.083
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.019
	CRR073315	Gold flowering 1	4.072
	CRR073316	Gold flowering 2	5.506
	CRR073317	Gold flowering 3	4.281
	CRR073318	Tawny withering 1	41.838
	CRR073319	Tawny withering 2	30.219
	CRR073320	Tawny withering 3	46.552