Detail information of GWHGAAZE016361


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011078461.10PREDICTED: xylulose kinase-like isoform X1 [Sesamum indicum]
trEMBLtr|A0A068TXI9|A0A068TXI9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313|EMBL:CDP00976.1}
TAIR10AT5G49650.10xylulose kinase-2

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7471590674721675-
GWHAAZE00000004mRNA7471590674721675-
GWHAAZE00000004exon7471590674716138-
GWHAAZE00000004exon7471661874716792-
GWHAAZE00000004exon7471687974717030-
GWHAAZE00000004exon7471742474717477-
GWHAAZE00000004exon7471756174717635-
GWHAAZE00000004exon7471790474718024-
GWHAAZE00000004exon7471831974718374-
GWHAAZE00000004exon7471899874719062-
GWHAAZE00000004exon7471946874719556-
GWHAAZE00000004exon7472000374720654-
GWHAAZE00000004exon7472161774721675-
GWHAAZE00000004CDS7472161774721675-
GWHAAZE00000004CDS7472000374720654-
GWHAAZE00000004CDS7471946874719556-
GWHAAZE00000004CDS7471899874719062-
GWHAAZE00000004CDS7471831974718374-
GWHAAZE00000004CDS7471790474718024-
GWHAAZE00000004CDS7471756174717635-
GWHAAZE00000004CDS7471742474717477-
GWHAAZE00000004CDS7471687974717030-
GWHAAZE00000004CDS7471661874716792-
GWHAAZE00000004CDS7471590674716138-
Transcript Sequence

Network for GWHGAAZE016361

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00370.22FGGY_N1382872.20E-16
PF02782.17FGGY_C2995132.60E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00854xylB, XYLB Metabolic pathways map01100
Pentose and glucuronate interconversionsmap00040

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0042732biological_processD-xylose metabolic process
GO:0016773molecular_functionphosphotransferase activity, alcohol group as acceptor
GO:0004856molecular_functionxylulokinase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf36.943
SRR3591706second leaf13.155
SRR3591707mature leaf16.134
SRR3591708Shoot apex16.403
SRR3591709Stem39.546
SRR3591710White floral bud50.915
SRR3591711White flower59.583
SRR3591712Green floral bud23.695
SRR3591713Yellow flower107.189
SRP173429 SRR8316895Juvenile bud stage 13.757
SRR8316896Juvenile bud stage 23.883
SRR8316897Juvenile bud stage 8.937
SRR8316894Third green stage 10.272
SRR8316900Third green stage 31.188
SRR8316901Third green stage 27.994
SRR8316898Complete white stage 30.697
SRR8316899Complete white stage 23.299
SRR8316903Complete white stage 45.495
SRR8316902Silver flowering stage43.366
SRR8316904Silver flowering stage70.924
SRR8316905Silver flowering stage42.636
SRR8316906Gold flowering stage 131.102
SRR8316907Gold flowering stage 119.537
SRR8316908Gold flowering stage 100.234
SRP132670SRR6706286Control42.191
SRR6706287Light intensity 50%41.472
SRR6706288Light intensity 20%39.972
CNP0000432CNS0095592Slightly white alabastrum(diploid) 116.401
CNS0095593Slightly white alabastrum(diploid) 216.792
CNS0095594Slightly white alabastrum(diploid) 316.858
CNS0095595Whole white alabastrum(diploid) 217.824
CNS0095596Whole white alabastrum(diploid) 321.530
CNS0095597Whole white alabastrum(diploid) 416.616
CNS0095598Silvery flower (diploied) 123.462
CNS0095599Silvery flower (diploied) 220.408
CNS0095600Silvery flower (diploied) 387.367
CNS0095601Golden flower (diploid) 124.556
CNS0095602Golden flower (diploid) 284.591
CNS0095603Golden flower (diploid) 383.208
CNS0095604Slightly white alabastrum(tetraploid) 129.727
CNS0095605Slightly white alabastrum(tetraploid) 229.650
CNS0095606Slightly white alabastrum(tetraploid) 325.746
CNS0095607Whole white alabastrum(tetraploid) 126.909
CNS0095608Whole white alabastrum(tetraploid) 224.408
CNS0095609Whole white alabastrum(tetraploid) 335.912
CNS0095610Silvery flower (tetraploid) 180.023
CNS0095611Silvery flower (tetraploid) 289.882
CNS0095612Silvery flower (tetraploid) 3108.423
CNS0095613Golden flower (tetraploid) 159.075
CNS0095614Golden flower (tetraploid) 273.706
CNS0095615Golden flower (tetraploid) 3165.448
CRA001975CRR073297Stem 118.942
CRR073298Stem 221.180
CRR073299Stem 319.462
CRR073300Leaf 120.733
CRR073301Leaf 224.695
CRR073302Leaf 322.672
CRR073303Juvenile bud 123.037
CRR073304Juvenile bud 218.163
CRR073305Juvenile bud 325.790
CRR073306Third green 1100.782
CRR073307Third green 285.534
CRR073308Third green 385.875
CRR073309Second white 167.899
CRR073310Second white 250.249
CRR073311Second white 369.614
CRR073312Silver flowering 178.549
CRR073313Silver flowering 260.287
CRR073314Silver flowering 355.483
CRR073315Gold flowering 17.359
CRR073316Gold flowering 210.569
CRR073317Gold flowering 38.990
CRR073318Tawny withering 119.819
CRR073319Tawny withering 214.918
CRR073320Tawny withering 317.463