Gene detail

Detail information of GWHGAAZE016353

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664066.1	0	PREDICTED: aux/IAA protein isoform X1 [Vitis vinifera]
Swissprot	tr\|Q38827\|IAA9_ARATH	9E-127	Auxin-responsive protein IAA9
trEMBL	tr\|E5L879\|E5L879_VITVI	0	Auxin-responsive protein {ECO:0000256\|RuleBase:RU004549}
TAIR10	AT5G65670.2	2E-95	indole-3-acetic acid inducible 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	74615919	74619366	+
GWHAAZE00000004	mRNA	74615919	74619366	+
GWHAAZE00000004	exon	74615919	74616311	+
GWHAAZE00000004	exon	74616392	74616618	+
GWHAAZE00000004	exon	74616928	74617154	+
GWHAAZE00000004	exon	74617289	74617430	+
GWHAAZE00000004	exon	74618313	74618374	+
GWHAAZE00000004	exon	74619329	74619366	+
GWHAAZE00000004	CDS	74615919	74616311	+
GWHAAZE00000004	CDS	74616392	74616618	+
GWHAAZE00000004	CDS	74616928	74617154	+
GWHAAZE00000004	CDS	74617289	74617430	+
GWHAAZE00000004	CDS	74618313	74618374	+
GWHAAZE00000004	CDS	74619329	74619366	+

Transcript Sequence
>GWHTAAZE016373 ATGTCTCCACCTCTGCTTAGCACTGGGGAAAGCAATGTCACTTTGTTGGCCTCTCCATCCTCCATGGAAAGTATATGCCAAAATGGATCACAACTAAAAGAGCGTAACTACATGGGTTTGTCTGATTGTTCTTCTGTGGACAGTTCTACTATCTCCACTTCCTCAGAAGACAATAATGTTAGCCTGAATTTGAAGGCAACAGAGCTGAGGCTCGGTCTTCCTGGATCCCACTCTCCCAACATGGTTCCGGAACTTAACCTGCTGAGCTCAGCAAAGCTTGATGAGAAGCGACTTTTTCCTTTGCACCCTTTGAAAGAGGGTAATTTATCAATATCCCATAAGGCTTCTGGCAGCAAAAGAGGGTTCTCGGATGCCATGGATGGATTCTCAGAGGGCCAATACCTTGTTAATACAGAGGTTAATGTGATGCTATCACCCAGGCCTCCTTCAAACTTTGGTGTGAAATCGAGTGCTGTGAAGGAGAACCCTATGGCTCAACCAGCCAAAATGAAAGAGTTGATTCCCCAAAACCCAGTTCAGGATAGGCCCCGTGCTGCTAACGAGGCCAGTCTAAACCGTTCTGGTGCTGCAAATAATAATAGCAGTGCACCTGCTGCCAAGGCGCAGGTTGTGGGTTGGCCCCCTATAAGATCTTTTAGGAAGAACTCATTGGCTACCACTTCAAAGAACACTGACGAAGTAGATGGAAAAGCAGGGCCCGGTACTCTATTTGTCAAGGTCAGCATGGATGGTGCTCCTTATCTAAGGAAGGTGGACTTGAGAAGTTACTCTGTATATCAAGAGCTCTCCTCTGCCCTTGAGAAGATGTTCAGCTGCTTTACCATAGGTCAATATGGATCTCATGGAGCTTCAGGGAGGGAGAGGCTTAGCGAGAGCAAGCTCAAAGATTTGCTGCACGGATCAGAATATGTCCTTACATATGAGGATAAGGATGGTGATTGGATGCTTGTGGGTGATGTTCCATGGGAGATGTTTATTGGTACATGCAAGAGGCTGAGGATTATGAAGAGTTCTGATGCTATTGGCCTAGCTCCAAGGGCCGTGGAGAAATGTCAGAACACAAAGTAG

Network for GWHGAAZE016353

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02309.17	AUX_IAA	67	353	5.30E-91

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	pathway	mapID
K14484	IAA	Plant hormone signal transduction	map04075

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	761.546
	SRR3591706	second leaf	71.930
	SRR3591707	mature leaf	92.941
	SRR3591708	Shoot apex	236.724
	SRR3591709	Stem	968.079
	SRR3591710	White floral bud	365.500
	SRR3591711	White flower	331.432
	SRR3591712	Green floral bud	801.552
	SRR3591713	Yellow flower	331.222
SRP173429	SRR8316895	Juvenile bud stage	289.996
	SRR8316896	Juvenile bud stage	841.303
	SRR8316897	Juvenile bud stage	314.917
	SRR8316894	Third green stage	278.763
	SRR8316900	Third green stage	732.280
	SRR8316901	Third green stage	706.688
	SRR8316898	Complete white stage	240.237
	SRR8316899	Complete white stage	885.506
	SRR8316903	Complete white stage	382.045
	SRR8316902	Silver flowering stage	105.705
	SRR8316904	Silver flowering stage	145.119
	SRR8316905	Silver flowering stage	71.329
	SRR8316906	Gold flowering stage	207.615
	SRR8316907	Gold flowering stage	218.743
	SRR8316908	Gold flowering stage	222.536
SRP132670	SRR6706286	Control	669.114
	SRR6706287	Light intensity 50%	700.845
	SRR6706288	Light intensity 20%	744.524
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	370.040
	CNS0095593	Slightly white alabastrum(diploid) 2	575.064
	CNS0095594	Slightly white alabastrum(diploid) 3	555.815
	CNS0095595	Whole white alabastrum(diploid) 2	398.874
	CNS0095596	Whole white alabastrum(diploid) 3	406.104
	CNS0095597	Whole white alabastrum(diploid) 4	431.187
	CNS0095598	Silvery flower (diploied) 1	205.818
	CNS0095599	Silvery flower (diploied) 2	241.167
	CNS0095600	Silvery flower (diploied) 3	505.664
	CNS0095601	Golden flower (diploid) 1	198.969
	CNS0095602	Golden flower (diploid) 2	343.026
	CNS0095603	Golden flower (diploid) 3	333.913
	CNS0095604	Slightly white alabastrum(tetraploid) 1	410.903
	CNS0095605	Slightly white alabastrum(tetraploid) 2	349.866
	CNS0095606	Slightly white alabastrum(tetraploid) 3	739.904
	CNS0095607	Whole white alabastrum(tetraploid) 1	390.031
	CNS0095608	Whole white alabastrum(tetraploid) 2	359.445
	CNS0095609	Whole white alabastrum(tetraploid) 3	799.104
	CNS0095610	Silvery flower (tetraploid) 1	312.883
	CNS0095611	Silvery flower (tetraploid) 2	341.225
	CNS0095612	Silvery flower (tetraploid) 3	311.542
	CNS0095613	Golden flower (tetraploid) 1	253.373
	CNS0095614	Golden flower (tetraploid) 2	268.247
	CNS0095615	Golden flower (tetraploid) 3	168.175
CRA001975	CRR073297	Stem 1	1051.045
	CRR073298	Stem 2	1212.697
	CRR073299	Stem 3	1662.198
	CRR073300	Leaf 1	1098.456
	CRR073301	Leaf 2	1025.125
	CRR073302	Leaf 3	1265.317
	CRR073303	Juvenile bud 1	1122.712
	CRR073304	Juvenile bud 2	1059.002
	CRR073305	Juvenile bud 3	1744.575
	CRR073306	Third green 1	299.072
	CRR073307	Third green 2	352.136
	CRR073308	Third green 3	324.117
	CRR073309	Second white 1	377.284
	CRR073310	Second white 2	245.634
	CRR073311	Second white 3	214.813
	CRR073312	Silver flowering 1	199.334
	CRR073313	Silver flowering 2	210.475
	CRR073314	Silver flowering 3	175.682
	CRR073315	Gold flowering 1	97.718
	CRR073316	Gold flowering 2	126.001
	CRR073317	Gold flowering 3	119.622
	CRR073318	Tawny withering 1	344.429
	CRR073319	Tawny withering 2	306.128
	CRR073320	Tawny withering 3	371.350