Detail information of GWHGAAZE016328


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010664416.10PREDICTED: uncharacterized protein YMR317W isoform X1 [Vitis vinifera]
trEMBLtr|F6H140|F6H140_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB45662.1}
TAIR10AT1G09710.17E-63Homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7375855573775570-
GWHAAZE00000004mRNA7375855573775570-
GWHAAZE00000004exon7377550073775570-
GWHAAZE00000004exon7377476673774958-
GWHAAZE00000004exon7377186573771951-
GWHAAZE00000004exon7376952673769876-
GWHAAZE00000004exon7376036273760506-
GWHAAZE00000004exon7375855573759651-
GWHAAZE00000004CDS7377550073775570-
GWHAAZE00000004CDS7377476673774958-
GWHAAZE00000004CDS7377186573771951-
GWHAAZE00000004CDS7376952673769876-
GWHAAZE00000004CDS7376036273760506-
GWHAAZE00000004CDS7375855573759651-
Transcript Sequence

Network for GWHGAAZE016328

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00249.32Myb_DNA-binding1922368.50E-08
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003677molecular_functionDNA binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.148
SRR3591706second leaf10.874
SRR3591707mature leaf8.962
SRR3591708Shoot apex15.285
SRR3591709Stem12.795
SRR3591710White floral bud6.816
SRR3591711White flower9.441
SRR3591712Green floral bud10.940
SRR3591713Yellow flower3.993
SRP173429 SRR8316895Juvenile bud stage 6.220
SRR8316896Juvenile bud stage 6.679
SRR8316897Juvenile bud stage 4.060
SRR8316894Third green stage 3.418
SRR8316900Third green stage 6.541
SRR8316901Third green stage 6.355
SRR8316898Complete white stage 2.034
SRR8316899Complete white stage 10.024
SRR8316903Complete white stage 4.184
SRR8316902Silver flowering stage1.682
SRR8316904Silver flowering stage2.878
SRR8316905Silver flowering stage1.192
SRR8316906Gold flowering stage 3.334
SRR8316907Gold flowering stage 3.514
SRR8316908Gold flowering stage 4.501
SRP132670SRR6706286Control9.691
SRR6706287Light intensity 50%9.598
SRR6706288Light intensity 20%8.931
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.995
CNS0095593Slightly white alabastrum(diploid) 27.108
CNS0095594Slightly white alabastrum(diploid) 35.301
CNS0095595Whole white alabastrum(diploid) 25.600
CNS0095596Whole white alabastrum(diploid) 33.519
CNS0095597Whole white alabastrum(diploid) 45.362
CNS0095598Silvery flower (diploied) 17.832
CNS0095599Silvery flower (diploied) 28.032
CNS0095600Silvery flower (diploied) 37.955
CNS0095601Golden flower (diploid) 17.867
CNS0095602Golden flower (diploid) 29.424
CNS0095603Golden flower (diploid) 39.231
CNS0095604Slightly white alabastrum(tetraploid) 18.078
CNS0095605Slightly white alabastrum(tetraploid) 25.498
CNS0095606Slightly white alabastrum(tetraploid) 314.037
CNS0095607Whole white alabastrum(tetraploid) 15.341
CNS0095608Whole white alabastrum(tetraploid) 23.050
CNS0095609Whole white alabastrum(tetraploid) 36.736
CNS0095610Silvery flower (tetraploid) 15.718
CNS0095611Silvery flower (tetraploid) 210.327
CNS0095612Silvery flower (tetraploid) 36.648
CNS0095613Golden flower (tetraploid) 13.153
CNS0095614Golden flower (tetraploid) 26.380
CNS0095615Golden flower (tetraploid) 34.965
CRA001975CRR073297Stem 113.624
CRR073298Stem 214.493
CRR073299Stem 313.871
CRR073300Leaf 111.868
CRR073301Leaf 213.092
CRR073302Leaf 313.122
CRR073303Juvenile bud 110.136
CRR073304Juvenile bud 27.453
CRR073305Juvenile bud 314.484
CRR073306Third green 12.037
CRR073307Third green 21.367
CRR073308Third green 32.034
CRR073309Second white 11.908
CRR073310Second white 21.840
CRR073311Second white 32.555
CRR073312Silver flowering 11.380
CRR073313Silver flowering 22.334
CRR073314Silver flowering 31.015
CRR073315Gold flowering 18.210
CRR073316Gold flowering 211.220
CRR073317Gold flowering 38.541
CRR073318Tawny withering 112.478
CRR073319Tawny withering 27.901
CRR073320Tawny withering 313.769