Detail information of GWHGAAZE016277


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002267875.10PREDICTED: ATP-dependent DNA helicase 2 subunit KU70 isoform X1 [Vitis vinifera]
Swissprottr|Q7F1M0|KU70_ORYSJ0ATP-dependent DNA helicase 2 subunit KU70
trEMBLtr|D7U9N4|D7U9N4_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI39448.3}
TAIR10AT1G16970.10KU70 homolog

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7278063972790502-
GWHAAZE00000004mRNA7278063972790502-
GWHAAZE00000004exon7278063972780752-
GWHAAZE00000004exon7278152572781711-
GWHAAZE00000004exon7278182072781922-
GWHAAZE00000004exon7278373972783856-
GWHAAZE00000004exon7278392272784032-
GWHAAZE00000004exon7278472572784785-
GWHAAZE00000004exon7278523872785299-
GWHAAZE00000004exon7278599272786139-
GWHAAZE00000004exon7278627772786353-
GWHAAZE00000004exon7278850772788581-
GWHAAZE00000004exon7278867572788758-
GWHAAZE00000004exon7278912972789246-
GWHAAZE00000004exon7278935072789455-
GWHAAZE00000004exon7278955872789672-
GWHAAZE00000004exon7278994672790082-
GWHAAZE00000004exon7279048472790502-
GWHAAZE00000004CDS7279048472790502-
GWHAAZE00000004CDS7278994672790082-
GWHAAZE00000004CDS7278955872789672-
GWHAAZE00000004CDS7278935072789455-
GWHAAZE00000004CDS7278912972789246-
GWHAAZE00000004CDS7278867572788758-
GWHAAZE00000004CDS7278850772788581-
GWHAAZE00000004CDS7278627772786353-
GWHAAZE00000004CDS7278599272786139-
GWHAAZE00000004CDS7278523872785299-
GWHAAZE00000004CDS7278472572784785-
GWHAAZE00000004CDS7278392272784032-
GWHAAZE00000004CDS7278373972783856-
GWHAAZE00000004CDS7278182072781922-
GWHAAZE00000004CDS7278152572781711-
GWHAAZE00000004CDS7278063972780752-
Transcript Sequence

Network for GWHGAAZE016277

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03731.16Ku_N142126.30E-50
PF02735.17Ku2193873.30E-34
PF03730.15Ku_C4014849.50E-19
PF02037.28SAP5085411.10E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10884XRCC6, KU70, G22P1 Non-homologous end-joining map03450

Gene Ontology

GO term OntologyName
GO:0000723biological_processtelomere maintenance
GO:0006303biological_processdouble-strand break repair via nonhomologous end joining
GO:0005634cellular_componentnucleus
GO:0043564cellular_componentKu70:Ku80 complex
GO:0003677molecular_functionDNA binding
GO:0003684molecular_functiondamaged DNA binding
GO:0042162molecular_functiontelomeric DNA binding
GO:0003678molecular_functionDNA helicase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.973
SRR3591706second leaf5.696
SRR3591707mature leaf5.168
SRR3591708Shoot apex20.868
SRR3591709Stem19.332
SRR3591710White floral bud7.428
SRR3591711White flower14.288
SRR3591712Green floral bud14.069
SRR3591713Yellow flower9.668
SRP173429 SRR8316895Juvenile bud stage 10.864
SRR8316896Juvenile bud stage 16.667
SRR8316897Juvenile bud stage 7.217
SRR8316894Third green stage 6.310
SRR8316900Third green stage 17.933
SRR8316901Third green stage 17.026
SRR8316898Complete white stage 4.775
SRR8316899Complete white stage 20.708
SRR8316903Complete white stage 5.661
SRR8316902Silver flowering stage3.984
SRR8316904Silver flowering stage6.985
SRR8316905Silver flowering stage3.038
SRR8316906Gold flowering stage 11.639
SRR8316907Gold flowering stage 12.192
SRR8316908Gold flowering stage 13.650
SRP132670SRR6706286Control8.441
SRR6706287Light intensity 50%9.444
SRR6706288Light intensity 20%10.965
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.055
CNS0095593Slightly white alabastrum(diploid) 213.681
CNS0095594Slightly white alabastrum(diploid) 314.618
CNS0095595Whole white alabastrum(diploid) 210.757
CNS0095596Whole white alabastrum(diploid) 311.078
CNS0095597Whole white alabastrum(diploid) 412.689
CNS0095598Silvery flower (diploied) 113.117
CNS0095599Silvery flower (diploied) 214.185
CNS0095600Silvery flower (diploied) 311.846
CNS0095601Golden flower (diploid) 112.324
CNS0095602Golden flower (diploid) 29.096
CNS0095603Golden flower (diploid) 38.825
CNS0095604Slightly white alabastrum(tetraploid) 18.746
CNS0095605Slightly white alabastrum(tetraploid) 28.620
CNS0095606Slightly white alabastrum(tetraploid) 312.343
CNS0095607Whole white alabastrum(tetraploid) 17.570
CNS0095608Whole white alabastrum(tetraploid) 26.099
CNS0095609Whole white alabastrum(tetraploid) 38.883
CNS0095610Silvery flower (tetraploid) 16.931
CNS0095611Silvery flower (tetraploid) 27.996
CNS0095612Silvery flower (tetraploid) 318.374
CNS0095613Golden flower (tetraploid) 13.483
CNS0095614Golden flower (tetraploid) 25.302
CNS0095615Golden flower (tetraploid) 32.622
CRA001975CRR073297Stem 112.246
CRR073298Stem 212.412
CRR073299Stem 311.591
CRR073300Leaf 110.782
CRR073301Leaf 210.183
CRR073302Leaf 310.767
CRR073303Juvenile bud 111.325
CRR073304Juvenile bud 26.196
CRR073305Juvenile bud 311.889
CRR073306Third green 15.886
CRR073307Third green 24.864
CRR073308Third green 36.299
CRR073309Second white 112.718
CRR073310Second white 214.741
CRR073311Second white 311.092
CRR073312Silver flowering 16.067
CRR073313Silver flowering 25.098
CRR073314Silver flowering 38.282
CRR073315Gold flowering 14.630
CRR073316Gold flowering 28.451
CRR073317Gold flowering 33.211
CRR073318Tawny withering 110.260
CRR073319Tawny withering 29.986
CRR073320Tawny withering 310.672