Gene detail

Detail information of GWHGAAZE016271

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP41417.1	0	hypothetical protein JCGZ_15824 [Jatropha curcas]
Swissprot	tr\|Q39230\|SYS_ARATH	2E-79	Serine--tRNA ligase
trEMBL	tr\|A0A067KZ22\|A0A067KZ22_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP41417.1}
TAIR10	AT1G11870.2	0	Seryl-tRNA synthetase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	72649139	72655262	+
GWHAAZE00000004	mRNA	72649139	72655262	+
GWHAAZE00000004	exon	72649139	72649303	+
GWHAAZE00000004	exon	72650793	72650886	+
GWHAAZE00000004	exon	72650973	72651121	+
GWHAAZE00000004	exon	72651208	72651300	+
GWHAAZE00000004	exon	72651612	72651791	+
GWHAAZE00000004	exon	72653062	72653228	+
GWHAAZE00000004	exon	72654121	72654255	+
GWHAAZE00000004	exon	72654354	72654447	+
GWHAAZE00000004	exon	72654990	72655262	+
GWHAAZE00000004	CDS	72649139	72649303	+
GWHAAZE00000004	CDS	72650793	72650886	+
GWHAAZE00000004	CDS	72650973	72651121	+
GWHAAZE00000004	CDS	72651208	72651300	+
GWHAAZE00000004	CDS	72651612	72651791	+
GWHAAZE00000004	CDS	72653062	72653228	+
GWHAAZE00000004	CDS	72654121	72654255	+
GWHAAZE00000004	CDS	72654354	72654447	+
GWHAAZE00000004	CDS	72654990	72655262	+

Transcript Sequence
>GWHTAAZE016291 ATGGTCAATGGTTCAGTATTGAAACCTCAATGGAAAGCGGCTATAGACTTCAAGTGGATTCGAGACAACCAAGCGGATGTTGCATTGAACCTAAGAAACAGGAACTCCAATGCTAACTTGAATCTAGTCCTTGAGCTCTACGATCGAATGTTAAATCTTCAAAAGGAAGTTGAACGGCTTCGAGCAGAGAGGAATGTGGTTGCTAACAAGATGAAAGGAAAGGTGGAACCCTCGGAGCGTCAAAAACTCATTGAAGAGGGAAAGAATTTAAAGGAAGGACTGCTTGTTTTAGAAGAAGACCTGCTTCAAGTCACGGATGAGCTTCAGCAAGAAGCACAATGTATACCAAATATGACACATCCAGATGTTCCAATAGGAGGGGAAGATTGTTCGACAGTGAGAAAAGAGGTTGGTGCTCCTCATGCTTGTAGTTTCCCTTTTAAGGACCACTTTCAACTTGGGAAAGAGCTAGATCTGTTTGATTTTGATGCCGCTGCCGAGGTTAGTGGGTCCAAATTCTATTACCTGAAGAATGAAGCTGTTCTGCTAGAGATGGCACTTATAAACTGGACACTGTCGGAAGTAATGAAAAGGGGCTTTACACCTCTTACAACTCCGGAAATTGTAAGATCTTCTGTTGTTGAAAAATGTGGCTTTCAACCTCGTGGAGCAAACACTCAGGTATACTCAATAGAGGGTAGTGATCAATGCCTTATTGGCACAGCAGAGATACCAGTGGGTGGAATTCATATGGACTCTATTCTTCCCGAATCTAATTTACCTTTGAAGTATGTGGCCTTTTCTCATTGCTTTCGTACCGAAGCTGGAGCAGCAGGCGCTGCTACGAGGGGTCTTTATCGAGTTCACCAGTTTAGCAAGGTGGAGATGTTCATACTATGCCGACCTGAGGAAAGTGATTCATACCATGAAGAACTAATTGGAATTGAAGAGGACCTATTCTCAGCATTGGGATTTCATTTCAAAACTTTGAACATGGCTTCGGGGGATTTAGGTGCGCCAGCATACCGTAAATTTGATGTGGAGGCATGGATGCCAGGCTTGGGACGATATGGCGAGATATCAAGCGCGTCAAATTGTACGGACTATCAGAGCCGTCGATTGGGAATTCGGTACAGGCCGGAATCCACAGCAACAAATTCTTCTAAGAAGGGAAAAGGAAATCCGACACAGTTTGTGCACACGCTAAATGCAACAGCGTGTGCAGTTCCAAGAATGATTGTATGTTTGCTCGAGAACTACCAACAAGAGGATGGATCGGTGGTTATCCCAGAGCCATTAAGGCCATTCATGGGTGGTCTTCAGATTATTTCTCCTAAATCCAAATTGTGA

Network for GWHGAAZE016271

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02403.23	Seryl_tRNA_N	15	118	7.10E-19
PF00587.26	tRNA-synt_2b	233	420	6.60E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01875	SARS, serS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006434	biological_process	seryl-tRNA aminoacylation
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0000166	molecular_function	nucleotide binding
GO:0004828	molecular_function	serine-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.710
	SRR3591706	second leaf	9.177
	SRR3591707	mature leaf	9.748
	SRR3591708	Shoot apex	14.532
	SRR3591709	Stem	5.944
	SRR3591710	White floral bud	8.712
	SRR3591711	White flower	17.278
	SRR3591712	Green floral bud	12.634
	SRR3591713	Yellow flower	21.925
SRP173429	SRR8316895	Juvenile bud stage	9.981
	SRR8316896	Juvenile bud stage	15.130
	SRR8316897	Juvenile bud stage	6.058
	SRR8316894	Third green stage	5.943
	SRR8316900	Third green stage	19.794
	SRR8316901	Third green stage	15.818
	SRR8316898	Complete white stage	5.593
	SRR8316899	Complete white stage	14.298
	SRR8316903	Complete white stage	7.846
	SRR8316902	Silver flowering stage	7.809
	SRR8316904	Silver flowering stage	10.786
	SRR8316905	Silver flowering stage	5.502
	SRR8316906	Gold flowering stage	19.896
	SRR8316907	Gold flowering stage	20.302
	SRR8316908	Gold flowering stage	22.814
SRP132670	SRR6706286	Control	11.360
	SRR6706287	Light intensity 50%	11.787
	SRR6706288	Light intensity 20%	13.251
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.268
	CNS0095593	Slightly white alabastrum(diploid) 2	10.622
	CNS0095594	Slightly white alabastrum(diploid) 3	15.160
	CNS0095595	Whole white alabastrum(diploid) 2	10.987
	CNS0095596	Whole white alabastrum(diploid) 3	13.282
	CNS0095597	Whole white alabastrum(diploid) 4	10.611
	CNS0095598	Silvery flower (diploied) 1	12.250
	CNS0095599	Silvery flower (diploied) 2	11.597
	CNS0095600	Silvery flower (diploied) 3	16.811
	CNS0095601	Golden flower (diploid) 1	9.832
	CNS0095602	Golden flower (diploid) 2	14.420
	CNS0095603	Golden flower (diploid) 3	12.387
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.123
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.968
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.674
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.869
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.280
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.907
	CNS0095610	Silvery flower (tetraploid) 1	21.655
	CNS0095611	Silvery flower (tetraploid) 2	22.730
	CNS0095612	Silvery flower (tetraploid) 3	25.464
	CNS0095613	Golden flower (tetraploid) 1	23.309
	CNS0095614	Golden flower (tetraploid) 2	20.977
	CNS0095615	Golden flower (tetraploid) 3	18.156
CRA001975	CRR073297	Stem 1	16.961
	CRR073298	Stem 2	15.661
	CRR073299	Stem 3	15.498
	CRR073300	Leaf 1	16.490
	CRR073301	Leaf 2	15.397
	CRR073302	Leaf 3	12.962
	CRR073303	Juvenile bud 1	18.278
	CRR073304	Juvenile bud 2	13.149
	CRR073305	Juvenile bud 3	13.376
	CRR073306	Third green 1	10.196
	CRR073307	Third green 2	5.222
	CRR073308	Third green 3	8.725
	CRR073309	Second white 1	21.434
	CRR073310	Second white 2	18.953
	CRR073311	Second white 3	21.372
	CRR073312	Silver flowering 1	17.803
	CRR073313	Silver flowering 2	22.612
	CRR073314	Silver flowering 3	20.288
	CRR073315	Gold flowering 1	18.792
	CRR073316	Gold flowering 2	27.638
	CRR073317	Gold flowering 3	17.856
	CRR073318	Tawny withering 1	9.777
	CRR073319	Tawny withering 2	9.582
	CRR073320	Tawny withering 3	10.297