Gene detail

Detail information of GWHGAAZE016268

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_008386115.1	PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Malus domestica]
Swissprot	tr\|P37216\|AROG_SOLLC	Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic (Precursor)
trEMBL	tr\|O24051\|O24051_MORCI	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000313\|EMBL:CAA75092.1} (Precursor)
TAIR10	AT1G22410.1	Class-II DAHP synthetase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	72590399	72596223	+
GWHAAZE00000004	mRNA	72590399	72596223	+
GWHAAZE00000004	exon	72590399	72590929	+
GWHAAZE00000004	exon	72591627	72591904	+
GWHAAZE00000004	exon	72593092	72593317	+
GWHAAZE00000004	exon	72593948	72594193	+
GWHAAZE00000004	exon	72595969	72596223	+
GWHAAZE00000004	CDS	72590399	72590929	+
GWHAAZE00000004	CDS	72591627	72591904	+
GWHAAZE00000004	CDS	72593092	72593317	+
GWHAAZE00000004	CDS	72593948	72594193	+
GWHAAZE00000004	CDS	72595969	72596223	+

Transcript Sequence
>GWHTAAZE016288 ATGGCTCTCACAAGCACCAATTCGCTCCTTCCCACCAAACCCTTTCAAACCCAACAATCTTTTTCACATTCCTCAAAACCCACGTTCTCCTCAATTCCAATCTCCAACAGATCACTCCACTCCATCTCCGCTGTACACTCGCCGGAATCTTCCAAAGCACCCATAATCCCATCGGCAACAGCCAGTTCAACCCAAACTATCACAAACCCGGAAAAGATTTCTAAAGCATGGGCCGTAGAGAGCTGGAAATCCAAGAAAGCCCTTCAATTACCCGAGTACCCAGATCAGAAAGAGCTCGATTCGGTCCTACAAACCCTAGATGCGTTCCCGCCGATTGTTTTCGCCGGCGAGGCGAGGAATTTGGAGGAGAGGCTCGGTGAGGCTGCAATGGGTAATGCGTTTTTGCTTCAAGGTGGGGATTGTGCTGAGAGTTTCAAGGAGTTTAATGCCAATAATATAAGGGATACTTTTAGGATTCTGCTTCAAATGGGTGCTGTTTTGATGTTTGGTGGACAAATGCCTGTTATTAAGGTAGGAAGAATGGCAGGACAGTTTGCGAAGCCCAGATCAGACTCATTTGAGGAGAAGAACGGAGTGAAGCTACCTAGTTACAGAGGCGACAACATTAATGGAGACGATTTCGATTTGAAATCAAGAACTCCAGATCCTCAAAGATTGATTAGGGCCTATTGCCAATCTGCAGCTACTCTCAATCTCTTGAGGGCTTTTGCCACTGGAGGTTATGCTGCCATGCAGAGGATAACTCAATGGAATTTGGATTTTGCCGAGCACAGTGAACAGGGTGATAGGTACCGAGAACTAGCTAACCGAGTTGATGAGGCCCTTGGATTCATGGCTGCAGCTGGACTTACCAAGGAACATCCTATAATGACCACCACAGATTTTGGACCTCTCACGAGTGCTTGCTTTTGCCTTATGAACAGTCACTTACTAGGTTGGATTCTACTTCCGGCTTGTACTATGACTGCTCTGCCCATATGCTTTGGGTTGGGGAAAGAACACGCCAACTTGATGGTGAGCGATAAGATGGACCCAAGCCAACTAGTGAAGCTCGTTGAGATTTTGAATCCTCAGAACAAACCTGGGAGGATTACTATAATCACGAGAATGGGAGCGGAGAATATGAGGGTGAAGCTTCCCCATCTAATCAGGGCAGTTAGAAGAGCAGGGCAAATCGTCACATGGGTTAGTGACCCCATGCATGGCAACACCATTAAAGCTCCATGTGGTCTCAAAACTCGCCCGTTCGATGCTATCAGGTCTGAGGTGAAAGCATTTTTCGATGTGCACGAGCAAGAGGGATCCCACCCCGGAGGAGTTCATCTAGAGATGACGGGCCAAAACGTGACCGAGTGCATCGGTGGATCACAAACTGTGACCTTTGACGACTTGAGCTCCCGCTACCACACCCACTGCGACCCTAGGCTCAACGCATCTCAGTCTCTAGAGCTTGCGTTTATCATAGCCGAACGCTTGAGAAAGAGGAGGATGGGTGCCCAGCGCTCGTTGGCCTAG

Network for GWHGAAZE016268

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01474.17	DAHP_synth_2	77	301	9.80E-84
PF01474.17	DAHP_synth_2	345	496	8.90E-67

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01626	E2.5.1.54, aroF, aroG, aroH	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Phenylalanine, tyrosine and tryptophan biosynthesis	map00400
		Quorum sensing	map02024

Gene Ontology

GO term	Ontology	Name
GO:0009073	biological_process	aromatic amino acid family biosynthetic process
GO:0003849	molecular_function	3-deoxy-7-phosphoheptulonate synthase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1126.517
	SRR3591706	second leaf	1230.116
	SRR3591707	mature leaf	907.542
	SRR3591708	Shoot apex	605.659
	SRR3591709	Stem	6433.325
	SRR3591710	White floral bud	360.578
	SRR3591711	White flower	638.649
	SRR3591712	Green floral bud	544.596
	SRR3591713	Yellow flower	550.532
SRP173429	SRR8316895	Juvenile bud stage	643.234
	SRR8316896	Juvenile bud stage	668.128
	SRR8316897	Juvenile bud stage	239.439
	SRR8316894	Third green stage	210.734
	SRR8316900	Third green stage	479.846
	SRR8316901	Third green stage	514.592
	SRR8316898	Complete white stage	69.533
	SRR8316899	Complete white stage	449.231
	SRR8316903	Complete white stage	159.021
	SRR8316902	Silver flowering stage	224.454
	SRR8316904	Silver flowering stage	294.791
	SRR8316905	Silver flowering stage	189.482
	SRR8316906	Gold flowering stage	582.813
	SRR8316907	Gold flowering stage	545.930
	SRR8316908	Gold flowering stage	770.174
SRP132670	SRR6706286	Control	666.508
	SRR6706287	Light intensity 50%	690.055
	SRR6706288	Light intensity 20%	692.082
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	444.586
	CNS0095593	Slightly white alabastrum(diploid) 2	352.741
	CNS0095594	Slightly white alabastrum(diploid) 3	476.537
	CNS0095595	Whole white alabastrum(diploid) 2	301.906
	CNS0095596	Whole white alabastrum(diploid) 3	247.563
	CNS0095597	Whole white alabastrum(diploid) 4	260.583
	CNS0095598	Silvery flower (diploied) 1	492.754
	CNS0095599	Silvery flower (diploied) 2	693.633
	CNS0095600	Silvery flower (diploied) 3	260.327
	CNS0095601	Golden flower (diploid) 1	461.621
	CNS0095602	Golden flower (diploid) 2	355.235
	CNS0095603	Golden flower (diploid) 3	350.124
	CNS0095604	Slightly white alabastrum(tetraploid) 1	425.998
	CNS0095605	Slightly white alabastrum(tetraploid) 2	359.789
	CNS0095606	Slightly white alabastrum(tetraploid) 3	855.559
	CNS0095607	Whole white alabastrum(tetraploid) 1	280.951
	CNS0095608	Whole white alabastrum(tetraploid) 2	189.002
	CNS0095609	Whole white alabastrum(tetraploid) 3	437.517
	CNS0095610	Silvery flower (tetraploid) 1	195.391
	CNS0095611	Silvery flower (tetraploid) 2	210.422
	CNS0095612	Silvery flower (tetraploid) 3	115.574
	CNS0095613	Golden flower (tetraploid) 1	212.249
	CNS0095614	Golden flower (tetraploid) 2	337.447
	CNS0095615	Golden flower (tetraploid) 3	104.527
CRA001975	CRR073297	Stem 1	741.857
	CRR073298	Stem 2	683.918
	CRR073299	Stem 3	820.979
	CRR073300	Leaf 1	582.236
	CRR073301	Leaf 2	584.275
	CRR073302	Leaf 3	489.356
	CRR073303	Juvenile bud 1	499.553
	CRR073304	Juvenile bud 2	367.964
	CRR073305	Juvenile bud 3	656.829
	CRR073306	Third green 1	484.926
	CRR073307	Third green 2	256.190
	CRR073308	Third green 3	341.644
	CRR073309	Second white 1	355.826
	CRR073310	Second white 2	275.190
	CRR073311	Second white 3	323.320
	CRR073312	Silver flowering 1	628.893
	CRR073313	Silver flowering 2	811.853
	CRR073314	Silver flowering 3	781.181
	CRR073315	Gold flowering 1	182.743
	CRR073316	Gold flowering 2	215.044
	CRR073317	Gold flowering 3	238.867
	CRR073318	Tawny withering 1	382.207
	CRR073319	Tawny withering 2	350.164
	CRR073320	Tawny withering 3	459.507