Detail information of GWHGAAZE016257


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP01049.12.0241E-70unnamed protein product [Coffea canephora]
Swissprottr|Q9FMG4|SC35_ARATH2E-65Serine/arginine-rich splicing factor SC35
trEMBLtr|A0A068TYP9|A0A068TYP9_COFCA8E-71Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313|EMBL:CDP01049.1}
TAIR10AT5G64200.21E-53ortholog of human splicing factor SC35

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000004gene7228175072283595-
GWHAAZE00000004mRNA7228175072283595-
GWHAAZE00000004exon7228175072281822-
GWHAAZE00000004exon7228231272282378-
GWHAAZE00000004exon7228246872282547-
GWHAAZE00000004exon7228334472283422-
GWHAAZE00000004exon7228352072283595-
GWHAAZE00000004CDS7228352072283595-
GWHAAZE00000004CDS7228334472283422-
GWHAAZE00000004CDS7228246872282547-
GWHAAZE00000004CDS7228231272282378-
GWHAAZE00000004CDS7228175072281822-
Transcript Sequence

Network for GWHGAAZE016257

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_118873.20E-20
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12891SFRS2 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf43.760
SRR3591706second leaf23.357
SRR3591707mature leaf21.845
SRR3591708Shoot apex40.516
SRR3591709Stem43.699
SRR3591710White floral bud30.956
SRR3591711White flower26.246
SRR3591712Green floral bud30.371
SRR3591713Yellow flower29.588
SRP173429 SRR8316895Juvenile bud stage 25.702
SRR8316896Juvenile bud stage 33.688
SRR8316897Juvenile bud stage 18.881
SRR8316894Third green stage 13.587
SRR8316900Third green stage 37.324
SRR8316901Third green stage 37.000
SRR8316898Complete white stage 11.387
SRR8316899Complete white stage 37.277
SRR8316903Complete white stage 25.246
SRR8316902Silver flowering stage14.222
SRR8316904Silver flowering stage19.029
SRR8316905Silver flowering stage8.357
SRR8316906Gold flowering stage 24.929
SRR8316907Gold flowering stage 20.778
SRR8316908Gold flowering stage 27.348
SRP132670SRR6706286Control72.193
SRR6706287Light intensity 50%67.069
SRR6706288Light intensity 20%71.380
CNP0000432CNS0095592Slightly white alabastrum(diploid) 126.996
CNS0095593Slightly white alabastrum(diploid) 227.336
CNS0095594Slightly white alabastrum(diploid) 321.561
CNS0095595Whole white alabastrum(diploid) 220.559
CNS0095596Whole white alabastrum(diploid) 322.360
CNS0095597Whole white alabastrum(diploid) 416.516
CNS0095598Silvery flower (diploied) 124.228
CNS0095599Silvery flower (diploied) 223.757
CNS0095600Silvery flower (diploied) 323.452
CNS0095601Golden flower (diploid) 122.563
CNS0095602Golden flower (diploid) 222.180
CNS0095603Golden flower (diploid) 322.625
CNS0095604Slightly white alabastrum(tetraploid) 125.587
CNS0095605Slightly white alabastrum(tetraploid) 221.546
CNS0095606Slightly white alabastrum(tetraploid) 350.523
CNS0095607Whole white alabastrum(tetraploid) 116.469
CNS0095608Whole white alabastrum(tetraploid) 216.422
CNS0095609Whole white alabastrum(tetraploid) 327.605
CNS0095610Silvery flower (tetraploid) 130.118
CNS0095611Silvery flower (tetraploid) 225.597
CNS0095612Silvery flower (tetraploid) 319.353
CNS0095613Golden flower (tetraploid) 117.298
CNS0095614Golden flower (tetraploid) 227.931
CNS0095615Golden flower (tetraploid) 315.669
CRA001975CRR073297Stem 154.923
CRR073298Stem 247.345
CRR073299Stem 334.197
CRR073300Leaf 146.199
CRR073301Leaf 252.145
CRR073302Leaf 333.725
CRR073303Juvenile bud 135.546
CRR073304Juvenile bud 218.865
CRR073305Juvenile bud 335.958
CRR073306Third green 113.650
CRR073307Third green 212.476
CRR073308Third green 314.253
CRR073309Second white 116.553
CRR073310Second white 216.806
CRR073311Second white 39.410
CRR073312Silver flowering 114.082
CRR073313Silver flowering 212.760
CRR073314Silver flowering 318.570
CRR073315Gold flowering 121.387
CRR073316Gold flowering 237.153
CRR073317Gold flowering 319.324
CRR073318Tawny withering 139.405
CRR073319Tawny withering 232.139
CRR073320Tawny withering 340.170