Gene detail

Detail information of GWHGAAZE016224

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010664405.1	3.1288E-126	PREDICTED: probable ubiquitin-like-specific protease 2B isoform X2 [Vitis vinifera]
Swissprot	tr\|Q8L7S0\|ULP2B_ARATH	2E-67	Probable ubiquitin-like-specific protease 2B
trEMBL	tr\|A0A061FDN9\|A0A061FDN9_THECC	6E-115	Cysteine proteinases superfamily protein, putative {ECO:0000313\|EMBL:EOY15445.1}
TAIR10	AT1G09730.2	2E-58	Cysteine proteinases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71830179	71839256	-
GWHAAZE00000004	mRNA	71830179	71839256	-
GWHAAZE00000004	exon	71839121	71839256	-
GWHAAZE00000004	exon	71836302	71836627	-
GWHAAZE00000004	exon	71836127	71836214	-
GWHAAZE00000004	exon	71835984	71836033	-
GWHAAZE00000004	exon	71834976	71835173	-
GWHAAZE00000004	exon	71834824	71834899	-
GWHAAZE00000004	exon	71834248	71834404	-
GWHAAZE00000004	exon	71831467	71831598	-
GWHAAZE00000004	exon	71830179	71830383	-
GWHAAZE00000004	CDS	71839121	71839256	-
GWHAAZE00000004	CDS	71836302	71836627	-
GWHAAZE00000004	CDS	71836127	71836214	-
GWHAAZE00000004	CDS	71835984	71836033	-
GWHAAZE00000004	CDS	71834976	71835173	-
GWHAAZE00000004	CDS	71834824	71834899	-
GWHAAZE00000004	CDS	71834248	71834404	-
GWHAAZE00000004	CDS	71831467	71831598	-
GWHAAZE00000004	CDS	71830179	71830383	-

Transcript Sequence
>GWHTAAZE016244 ATGAAGAGTTCTTGTAAAGGTCTCGACGTTTTCGATTTCAAAGACGAGGATGGGATCCCTGAATACGCAGCTGCTGTTTATTCGAGCAAATTCAAAGCCTCTAACGCTATCGATAAGTATACCTTCCTTGAAAACGTTGCTCAGGGAACAAACATCCCATCGAAAGAGATCGGCAATATACTATGCGTGGATGTTGATGCAATCAACATTGATCACAATGTGGTCAATGGTGTTTCATTTGCGTCTCAGGATGAAGGAGATGATTGCGATGTTAAAAAAATTCCCAGATTAGGTGCTGATACAGAAATGAATTCTACAAATTCTGAACAACTTCCTCAAGTTTCGCCGACTGAAGTTGAACGAAGAAGTTTCTTCCTTGGAGTGGAAAGCAGTTCCAGTCCTGCAGTGGCTTTACCTAGTGAAAACAAATTAAACTTTTCCCTTTTGGAGTCCCCCTCCAATGATGAGTCAGCGGATGTGGTTTCAAATGCTGATGAAAGCATGAGTGAGAGATCTCTATCCACTTCTTCCTATGTTGCAGAAGATGATGTTCCCCTAGATGGAACATCACCAGATCAGTGCTTTAGCGGTTGGGAAATGGGCGATGGAAATATGACAGTTGTTTTCTGTCCCGATTATATTGTATATCGTGATAGATATTGTACAGATGCTGTGTTAACTTTTTTGAGCAGTTCCATTGAAATCAAGGGCTCAACTGCCTATGAAGACCAAGGAACCTTTGTCTTCCAATGTGGGCTCGATGATATCATGGATATAGAATCTCAATGGTGTCAAAGGATTGAGATGGCCATGGTAAAGATTCGTGTAATTTCAAAAAACGCTGTACAAGATGAAGATGTACATGGCACTTCTGTTGGTTGGATCAGTCTTCTTCTTAATTTTGCCTGTACTATTAATGATACAGGAATTGAGGAATTGAAGTTTGCTGTTGTTGATCCCGATTGGTATACAAAACAGGAAGTTATCACGTCTTGTGAAATGTACAAGGCTTTGTGGACCATTCTGCCAGATTTTGATGAGCCTTTTGAAGATGTTATTTATCCAAAAGGGGATGCTGATGCTGTTTCCATTAGTAAAAGAGATGTTGATCTACTACAACCAGACACATTTGTTAATGATACCATCATTGACTTCTACATGAAATATTTGAAGAATAAAATCCAACTTGATGAGAGGCAAAGATTCCACTTTTTCAATAGTTTCTTCTTTCGGAAACTGGCTGACCTTGACAAAGATCCATCTAGTGTTTTTGATGCAAGGGCTGCTTTTCAGCGTGTTCGTAAATGGACAAGAAAAGTGAATTTATTTGAAAAGGAATATATCTTTATTCCTGTAAATTTTAAGTAA

Network for GWHGAAZE016224

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02902.20	Peptidase_C48	377	454	1.30E-14

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	ULP

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006508	biological_process	proteolysis
GO:0008234	molecular_function	cysteine-type peptidase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.899
	SRR3591706	second leaf	7.921
	SRR3591707	mature leaf	11.714
	SRR3591708	Shoot apex	9.971
	SRR3591709	Stem	10.391
	SRR3591710	White floral bud	16.089
	SRR3591711	White flower	19.814
	SRR3591712	Green floral bud	14.695
	SRR3591713	Yellow flower	16.589
SRP173429	SRR8316895	Juvenile bud stage	5.003
	SRR8316896	Juvenile bud stage	6.507
	SRR8316897	Juvenile bud stage	5.320
	SRR8316894	Third green stage	4.587
	SRR8316900	Third green stage	10.195
	SRR8316901	Third green stage	7.281
	SRR8316898	Complete white stage	3.172
	SRR8316899	Complete white stage	12.021
	SRR8316903	Complete white stage	7.837
	SRR8316902	Silver flowering stage	4.770
	SRR8316904	Silver flowering stage	10.056
	SRR8316905	Silver flowering stage	4.650
	SRR8316906	Gold flowering stage	11.911
	SRR8316907	Gold flowering stage	9.469
	SRR8316908	Gold flowering stage	14.174
SRP132670	SRR6706286	Control	1.163
	SRR6706287	Light intensity 50%	2.939
	SRR6706288	Light intensity 20%	2.521
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.323
	CNS0095593	Slightly white alabastrum(diploid) 2	3.778
	CNS0095594	Slightly white alabastrum(diploid) 3	2.842
	CNS0095595	Whole white alabastrum(diploid) 2	3.180
	CNS0095596	Whole white alabastrum(diploid) 3	2.155
	CNS0095597	Whole white alabastrum(diploid) 4	3.309
	CNS0095598	Silvery flower (diploied) 1	5.787
	CNS0095599	Silvery flower (diploied) 2	5.288
	CNS0095600	Silvery flower (diploied) 3	12.752
	CNS0095601	Golden flower (diploid) 1	3.625
	CNS0095602	Golden flower (diploid) 2	12.474
	CNS0095603	Golden flower (diploid) 3	12.444
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.407
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.249
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.191
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.377
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.168
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.680
	CNS0095610	Silvery flower (tetraploid) 1	7.795
	CNS0095611	Silvery flower (tetraploid) 2	9.748
	CNS0095612	Silvery flower (tetraploid) 3	6.295
	CNS0095613	Golden flower (tetraploid) 1	3.929
	CNS0095614	Golden flower (tetraploid) 2	6.435
	CNS0095615	Golden flower (tetraploid) 3	9.324
CRA001975	CRR073297	Stem 1	3.913
	CRR073298	Stem 2	3.991
	CRR073299	Stem 3	3.331
	CRR073300	Leaf 1	5.616
	CRR073301	Leaf 2	3.001
	CRR073302	Leaf 3	3.455
	CRR073303	Juvenile bud 1	2.528
	CRR073304	Juvenile bud 2	2.073
	CRR073305	Juvenile bud 3	4.356
	CRR073306	Third green 1	2.788
	CRR073307	Third green 2	1.642
	CRR073308	Third green 3	2.038
	CRR073309	Second white 1	3.069
	CRR073310	Second white 2	5.064
	CRR073311	Second white 3	6.310
	CRR073312	Silver flowering 1	5.429
	CRR073313	Silver flowering 2	4.280
	CRR073314	Silver flowering 3	5.273
	CRR073315	Gold flowering 1	2.325
	CRR073316	Gold flowering 2	4.886
	CRR073317	Gold flowering 3	4.014
	CRR073318	Tawny withering 1	3.994
	CRR073319	Tawny withering 2	1.934
	CRR073320	Tawny withering 3	4.133