Gene detail

Detail information of GWHGAAZE016181

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009773846.1	PREDICTED: somatic embryogenesis receptor kinase 2 [Nicotiana sylvestris]
Swissprot	tr\|Q94AG2\|SERK1_ARATH	Somatic embryogenesis receptor kinase 1 (Precursor)
trEMBL	tr\|A0A068TXX7\|A0A068TXX7_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP01160.1}
TAIR10	AT1G71830.1	somatic embryogenesis receptor-like kinase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	71035510	71043412	+
GWHAAZE00000004	mRNA	71035510	71043412	+
GWHAAZE00000004	exon	71035510	71035552	+
GWHAAZE00000004	exon	71036372	71036504	+
GWHAAZE00000004	exon	71036605	71036676	+
GWHAAZE00000004	exon	71036993	71037136	+
GWHAAZE00000004	exon	71037224	71037311	+
GWHAAZE00000004	exon	71037902	71037978	+
GWHAAZE00000004	exon	71038320	71038391	+
GWHAAZE00000004	exon	71038474	71038586	+
GWHAAZE00000004	exon	71039118	71039249	+
GWHAAZE00000004	exon	71039790	71040131	+
GWHAAZE00000004	exon	71040894	71041411	+
GWHAAZE00000004	exon	71043050	71043412	+
GWHAAZE00000004	CDS	71035510	71035552	+
GWHAAZE00000004	CDS	71036372	71036504	+
GWHAAZE00000004	CDS	71036605	71036676	+
GWHAAZE00000004	CDS	71036993	71037136	+
GWHAAZE00000004	CDS	71037224	71037311	+
GWHAAZE00000004	CDS	71037902	71037978	+
GWHAAZE00000004	CDS	71038320	71038391	+
GWHAAZE00000004	CDS	71038474	71038586	+
GWHAAZE00000004	CDS	71039118	71039249	+
GWHAAZE00000004	CDS	71039790	71040131	+
GWHAAZE00000004	CDS	71040894	71041411	+
GWHAAZE00000004	CDS	71043050	71043364	+
GWHAAZE00000004	three_prime_UTR	71043365	71043412	+

Transcript Sequence
>GWHTAAZE016201 ATGGTGGTTCATCCTCTAAGGTTCATTTATGCAAACATGGAAGGTGATGCTTTACATAGCCTTAGGATCAACTTACAAGATCCTAATAATGTGCTACAGAGTTGGGACCCTACTCTTGTCAATCCCTGCACATGGTTTCATGTTACATGCAACAATGACAATAGTGTTATAAGAGTTGATCTAGGGAATGCAGCTTTATCTGGTGAATTGGTTTCACAGATTGGCCTCCTCAAGAATTTGCAGTACTTGGAACTGTATAGCAATAATATAAGTGGACCGATTCCTAATGATCTGGGAAATCTGACCAACTTGGTGAGCTTGGATCTCTACCTGAACAGATTTTCTGGTCCAATCCCAGGCACGTTGGGCAAGTTATCGAAATTGCGCTTCCTCGTGGTTATGCAATTGACATGTGCCCAACACACTAATGGTAGTGGCTGTATAGGAGTTGTTGTGGGAGTGGGTAGTGCTCATTTTGGTGGTAGGCGGCTTAACAACAACAGCTTGTCGGGTCCCATTCCTTTATCATTGACTAATATCTCATCACTACAAGTTCTGGATTTGTCAAACAATCTTCTTTCGGGGGCAGTTCCAGATAATGGCTCTTTTTCACTGTTTACCCCCATCAGTTTTACTAATAACCTGGATCTCTGCGGCCCGGTTACTGGACATCCTTGCCCAGGATCTCCTCCATTTTCTCCACCCCCTCCATTTGTCCCACCACCCCCAATATCTGTTCCAGGAGGGAATAGTGCGACTGGAGCTATTGCTGGAGGGGTTGCTGCTGGTGCCGCTCTACTGTTTGCTGCCCCTGCCATTGCATTTGCATGGTGGCGTCGCCGTAAACCACAAGAATATTTCTTTGATGTGCCTGCCGAAGAGGATCCCGAAGTCCACTTGGGGCAGCTTAAAAGGTTTTCTTTACGAGAATTACAAGTCGCAACAGATACATTTAGTAATAAAAACATTCTGGGTAGAGGTGGATTTGGTAAGGTATACAAGGGACGTCTAGCGGATGGTTCCTTGGTGGCCGTAAAAAGACTAAAGGAGGAGCGTACACCTGGCGGGGAGCTGCAATTCCAAACCGAAGTTGAGATGATTAGCATGGCCGTTCATCGTAATCTCCTTCGATTACGCGGATTTTGTATGACACCCACTGAACGCCTACTCGTTTATCCTTATATGGCTAATGGAAGTGTTGCGTCCTGTTTAAGAGCACCTGGCATTTTGTTATCTGGTTTATGTAAATTTGATACAATACTCGTAGTTTACCGCGTGTGCAAAAAGAAAGACATTCCCCACTTCTCTCTTTCACTAATAATTACTAGCCCTTTTGTAGAACGCCCTCCGTCTGAACCGCCACTTGATTGGCCAACACGAAAGCGCATTGCATTGGGATCTGCTAGAGGACTATCATATTTGCACGATCATTGTGACCCCAAGATTATTCACCGTGATGTGAAAGCCGCAAATATTTTGTTGGATGAGGAGTTTGAGGCTGTTGTCGGAGACTTTGGTTTGGCTAAACTCATGGACTACAAAGATACTCATGTTACTACTGCTGTACGAGGCACAATTGGGCACATAGCCCCAGAATACCTCTCCACTGGAAAGTCATCTGAGAAAACTGATGTTTTTGGGTATGGGATTATGCTTTTAGAGCTCATTACCGGTCAAAGGGCATTTGACCTTGCTCGCCTTGCAAATGATGACGATGTCATGTTGCTTGATTGGGTAAAAGGGTTACTGAAAGAGAAGAAACTGGAAATGCTGGTGGATCCGGATCTGCAGACAAATTATGTAGAGGGAGAAGTGGAGCAGCTAATTCAGGTGGCACTCCTATGCACGCAAGGCTCACCGATGGACCGACCCAAAATGTCGGAAGTGGTTAGAATGCTGGAGGGTGATGGCTTAGCCGAGAGGTGGGACGAGTGGCAAAAGGTCGAAGTTCACCGCCAGGAGATTGATCTTGCTCCTCACCCCACTTCCGATTGGATTGTTGATTCTACTGAAAATCTACACGCCTTTGAGTTATCTGGTCCAAGGTAAAACACAGAAAAGATTATTAGGACCTTTTTATTTTTTGGGTTATAAAGC

Network for GWHGAAZE016181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	11	51	1.60E-09
PF07714.18	PK_Tyr_Ser-Thr	321	633	1.10E-41

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-II

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	46.205
	SRR3591706	second leaf	15.531
	SRR3591707	mature leaf	5.467
	SRR3591708	Shoot apex	37.690
	SRR3591709	Stem	33.540
	SRR3591710	White floral bud	12.477
	SRR3591711	White flower	10.007
	SRR3591712	Green floral bud	18.331
	SRR3591713	Yellow flower	3.864
SRP173429	SRR8316895	Juvenile bud stage	19.977
	SRR8316896	Juvenile bud stage	26.036
	SRR8316897	Juvenile bud stage	12.193
	SRR8316894	Third green stage	9.933
	SRR8316900	Third green stage	22.401
	SRR8316901	Third green stage	23.943
	SRR8316898	Complete white stage	3.161
	SRR8316899	Complete white stage	28.239
	SRR8316903	Complete white stage	8.943
	SRR8316902	Silver flowering stage	2.190
	SRR8316904	Silver flowering stage	3.097
	SRR8316905	Silver flowering stage	1.380
	SRR8316906	Gold flowering stage	4.299
	SRR8316907	Gold flowering stage	4.513
	SRR8316908	Gold flowering stage	3.670
SRP132670	SRR6706286	Control	16.151
	SRR6706287	Light intensity 50%	16.977
	SRR6706288	Light intensity 20%	20.093
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.596
	CNS0095593	Slightly white alabastrum(diploid) 2	24.486
	CNS0095594	Slightly white alabastrum(diploid) 3	21.096
	CNS0095595	Whole white alabastrum(diploid) 2	20.998
	CNS0095596	Whole white alabastrum(diploid) 3	14.338
	CNS0095597	Whole white alabastrum(diploid) 4	14.123
	CNS0095598	Silvery flower (diploied) 1	20.631
	CNS0095599	Silvery flower (diploied) 2	22.627
	CNS0095600	Silvery flower (diploied) 3	10.850
	CNS0095601	Golden flower (diploid) 1	16.340
	CNS0095602	Golden flower (diploid) 2	15.085
	CNS0095603	Golden flower (diploid) 3	15.665
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.889
	CNS0095605	Slightly white alabastrum(tetraploid) 2	21.769
	CNS0095606	Slightly white alabastrum(tetraploid) 3	42.218
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.948
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.760
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.683
	CNS0095610	Silvery flower (tetraploid) 1	6.398
	CNS0095611	Silvery flower (tetraploid) 2	8.832
	CNS0095612	Silvery flower (tetraploid) 3	5.153
	CNS0095613	Golden flower (tetraploid) 1	3.650
	CNS0095614	Golden flower (tetraploid) 2	6.015
	CNS0095615	Golden flower (tetraploid) 3	1.882
CRA001975	CRR073297	Stem 1	39.219
	CRR073298	Stem 2	36.243
	CRR073299	Stem 3	38.084
	CRR073300	Leaf 1	37.873
	CRR073301	Leaf 2	36.207
	CRR073302	Leaf 3	27.606
	CRR073303	Juvenile bud 1	28.481
	CRR073304	Juvenile bud 2	23.970
	CRR073305	Juvenile bud 3	29.965
	CRR073306	Third green 1	1.643
	CRR073307	Third green 2	0.804
	CRR073308	Third green 3	2.144
	CRR073309	Second white 1	0.580
	CRR073310	Second white 2	0.868
	CRR073311	Second white 3	0.727
	CRR073312	Silver flowering 1	0.706
	CRR073313	Silver flowering 2	0.815
	CRR073314	Silver flowering 3	0.453
	CRR073315	Gold flowering 1	9.904
	CRR073316	Gold flowering 2	11.762
	CRR073317	Gold flowering 3	6.110
	CRR073318	Tawny withering 1	36.847
	CRR073319	Tawny withering 2	30.619
	CRR073320	Tawny withering 3	46.613