Gene detail

Detail information of GWHGAAZE016166

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011074131.1	0	PREDICTED: protein FEZ-like [Sesamum indicum]
Swissprot	tr\|Q84K00\|NAC78_ARATH	3E-68	NAC domain-containing protein 78
trEMBL	tr\|Q8LRL8\|Q8LRL8_PETHY	0	Nam-like protein 7 {ECO:0000313\|EMBL:AAM34770.1}
TAIR10	AT1G34190.1	1E-91	NAC domain containing protein 17

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	70620258	70623818	+
GWHAAZE00000004	mRNA	70620258	70623818	+
GWHAAZE00000004	exon	70620258	70620573	+
GWHAAZE00000004	exon	70621974	70623215	+
GWHAAZE00000004	exon	70623448	70623818	+
GWHAAZE00000004	five_prime_UTR	70620258	70620386	+
GWHAAZE00000004	CDS	70620387	70620573	+
GWHAAZE00000004	CDS	70621974	70623215	+
GWHAAZE00000004	CDS	70623448	70623818	+

Transcript Sequence
>GWHTAAZE016186 ATCATTCGTTCATTCACAAAAACTAGGGTTTTCTCTCTCGATCAAACCCTAGCGATTCCGATCATTTGAATCAAATTTCTCATCCATATTAACACAATTCCTGTTGATCGTGTTAGATCAATCGAAACGATGACGGTGTCCGATTTGTCTTCGTGTTTTGACGATGGGAAGTTCTTCCCGCCGGGATTTCGATTCCATCCGACCGATGAAGAGCTCGTGCTTTACTACTTGAAGAGGAAGATTTGTCGTCGAAAGCTAAAGCTCGACATCATCAGCGAGACCGATGTTTATAAGTGGGACCCCGAGGAGTTGCCTGGAATATCTAAATTGAAGACTGGGGACAGGCAATGGTTTTTCTTCAGCCCTAGAGATAGGAAATACCCGAACGCAGCAAGATCAAATAGGGCAACCATGCACGGGTACTGGAAAGCAACTGGAAAGGACCGCACAATATCGTGTAACTCTCGATCAGTTGGGATCAAGAAAACCCTTGTTTACTACGGTGGACGCGCACCTTCTGGTTTAAGGACCGACTGGGTTATGCATGAGTACACCCTGGATGAGGAGGAGCTCAAAAGATGCCAGAATGCTAAGGATTACTATGCGCTGTACAAAGTCTACAAGAAAAGTGGGCCCGGTCCGAAAAATGGCGAGCAGTATGGTGCGCCTTTTAAAGAAGAAGAATGGGCTGATGATGAGTGCTCGGATTTTAATGCCCCTGTTCCCCATGAGAACTTGGTGAAGGAGGGCAATAATGTCATTTCTGTTGAGAATACCAAAGCTGTTTGTGTACAGCCGCAGCTGATAAATCATTTGGAGGAGTTTATGAACCGGATTGCTGATGACCCTGTAGAACAGTTCGATATTGATTTCCCTTATGCATTGAATCAGCTTGTTGGTGAGGAAGAAACCCAAAGTATCTTGGTGGATAATTGTCCAAGGGAAGACAACTTACATGACCCGACCGTAGTGCAACATATTGCGCAGGCCAGCTTTGGACTGACCCAGTCAGATACGTCTCAGTTCCAATTATATGATGGACCAGCTGAGGTCACATCTGCACCAAATGTGGGTGGACCAGGGCCACCCGTGACCGAAGAGGATTTTCTTGAAGACTTTCTTGAAATGGATGACCTCACTGGTCCAGAACCCAGTGTTCAAAACTTTGAGGAACCAGTGGAGAACTTGTTGTTTGATGAGATGAATGGACTGAGTGAGGTTGACCTTTACCAAGATCCATCCATGATTTTTGGTGAGATGGGGGAATTTCTGCAGCCATATCTGAATAATCTTGAGAATGGAATGCCAAATGAAGGTACCCTTTCAGACATGAACAATATAGATATTGGTGCAGAAAATTGCTCACTGAATGGAGAGCCAGATGCGGTTTCACATTTGTACTTGAGCAATACAGATAATGGAATGGAAAATTACGAGCTGCAGCCTTATTCAACCAATGCAAACCAGATGGGTTATCAAACTTGGAGACACGATCAAAGATGCAGCGTCTTCACTCCAGCAGAAGCAAATCAAGGAGTAATTCCTCCACCAACTTCAGGTGCAGTATATGATTGTAATCTTGAAAATCTTGCTGCTAATGCAACAAATCAAATTCAAAATGGAAGTGGCAAAGAGGATGATGCCAAAGATTCGTGGTTCTCCTCTGCACTCTGGAGTTGGTTGGAGTCCGTGCCAACTAGTCCTGCTTCGGCCGCTGAGAGCCCTATTGCAAGTAGGGCCTTTAAGCGGCTGTCTAGCTTCAGTAGACTGCGAACAAGTACCAGAAACACAAATTATGCTGCAGCTCGAAAGAGGTTAGATAGATCTACGAGTATGTTTTTATGTTTCTTAATAATTGGAGTAGTTTGTGCTATGTTGGGGGTGTTGATAAGAACTTCTTTGAACGTTTCTGGTAGATATACTTATTAG

Network for GWHGAAZE016166

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	17	143	8.30E-36

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	49.712
	SRR3591706	second leaf	12.045
	SRR3591707	mature leaf	22.592
	SRR3591708	Shoot apex	26.157
	SRR3591709	Stem	56.992
	SRR3591710	White floral bud	34.411
	SRR3591711	White flower	51.964
	SRR3591712	Green floral bud	29.018
	SRR3591713	Yellow flower	33.931
SRP173429	SRR8316895	Juvenile bud stage	33.316
	SRR8316896	Juvenile bud stage	34.744
	SRR8316897	Juvenile bud stage	23.763
	SRR8316894	Third green stage	7.083
	SRR8316900	Third green stage	19.240
	SRR8316901	Third green stage	24.098
	SRR8316898	Complete white stage	10.638
	SRR8316899	Complete white stage	58.677
	SRR8316903	Complete white stage	15.071
	SRR8316902	Silver flowering stage	13.000
	SRR8316904	Silver flowering stage	19.127
	SRR8316905	Silver flowering stage	8.599
	SRR8316906	Gold flowering stage	31.972
	SRR8316907	Gold flowering stage	26.816
	SRR8316908	Gold flowering stage	38.356
SRP132670	SRR6706286	Control	35.836
	SRR6706287	Light intensity 50%	33.834
	SRR6706288	Light intensity 20%	29.571
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	25.894
	CNS0095593	Slightly white alabastrum(diploid) 2	26.195
	CNS0095594	Slightly white alabastrum(diploid) 3	28.072
	CNS0095595	Whole white alabastrum(diploid) 2	22.597
	CNS0095596	Whole white alabastrum(diploid) 3	13.161
	CNS0095597	Whole white alabastrum(diploid) 4	20.371
	CNS0095598	Silvery flower (diploied) 1	37.005
	CNS0095599	Silvery flower (diploied) 2	41.550
	CNS0095600	Silvery flower (diploied) 3	51.960
	CNS0095601	Golden flower (diploid) 1	45.861
	CNS0095602	Golden flower (diploid) 2	64.340
	CNS0095603	Golden flower (diploid) 3	66.409
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.829
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.614
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.975
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.675
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.429
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.072
	CNS0095610	Silvery flower (tetraploid) 1	33.204
	CNS0095611	Silvery flower (tetraploid) 2	29.537
	CNS0095612	Silvery flower (tetraploid) 3	29.832
	CNS0095613	Golden flower (tetraploid) 1	27.031
	CNS0095614	Golden flower (tetraploid) 2	35.623
	CNS0095615	Golden flower (tetraploid) 3	40.793
CRA001975	CRR073297	Stem 1	23.298
	CRR073298	Stem 2	21.638
	CRR073299	Stem 3	23.177
	CRR073300	Leaf 1	23.952
	CRR073301	Leaf 2	22.253
	CRR073302	Leaf 3	19.566
	CRR073303	Juvenile bud 1	20.481
	CRR073304	Juvenile bud 2	25.518
	CRR073305	Juvenile bud 3	37.708
	CRR073306	Third green 1	21.424
	CRR073307	Third green 2	19.644
	CRR073308	Third green 3	20.087
	CRR073309	Second white 1	29.937
	CRR073310	Second white 2	20.297
	CRR073311	Second white 3	20.326
	CRR073312	Silver flowering 1	30.589
	CRR073313	Silver flowering 2	31.067
	CRR073314	Silver flowering 3	22.410
	CRR073315	Gold flowering 1	26.174
	CRR073316	Gold flowering 2	30.610
	CRR073317	Gold flowering 3	26.331
	CRR073318	Tawny withering 1	34.049
	CRR073319	Tawny withering 2	41.522
	CRR073320	Tawny withering 3	38.434