Gene detail

Detail information of GWHGAAZE016164

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP01140.1	1.8059E-171	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M9G7\|CAPZB_ARATH	3E-162	Probable F-actin-capping protein subunit beta
trEMBL	tr\|A0A068TXV5\|A0A068TXV5_COFCA	7E-172	Coffea canephora DH200=94 genomic scaffold, scaffold_6 {ECO:0000313\|EMBL:CDP01140.1}
TAIR10	AT1G71790.1	2E-117	Subunits of heterodimeric actin filament capping protein Capz superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	70586702	70591663	+
GWHAAZE00000004	mRNA	70586702	70591663	+
GWHAAZE00000004	exon	70586702	70586830	+
GWHAAZE00000004	exon	70589063	70589133	+
GWHAAZE00000004	exon	70589449	70589562	+
GWHAAZE00000004	exon	70589859	70589941	+
GWHAAZE00000004	exon	70590046	70590119	+
GWHAAZE00000004	exon	70590327	70590446	+
GWHAAZE00000004	exon	70590902	70590997	+
GWHAAZE00000004	exon	70591571	70591663	+
GWHAAZE00000004	CDS	70586702	70586830	+
GWHAAZE00000004	CDS	70589063	70589133	+
GWHAAZE00000004	CDS	70589449	70589562	+
GWHAAZE00000004	CDS	70589859	70589941	+
GWHAAZE00000004	CDS	70590046	70590119	+
GWHAAZE00000004	CDS	70590327	70590446	+
GWHAAZE00000004	CDS	70590902	70590997	+
GWHAAZE00000004	CDS	70591571	70591663	+

Transcript Sequence
>GWHTAAZE016184 ATGGAGGCGGCGATGGGGTTGATTCGAAGGATTCCTCCAAAGCACTCAGAAACAGCTCTCTCTGCACTCCTCAGCCTCTTGCCTCACCACTCCTCAGATCTCCTTTCTCAAGTCGATCAACCTCTTCAGGTTTTATGTGATGTGGACTCTGGCAAGGAGTTTATATTATGTGAATACAACCGAGATGCTGACTCTTATAGATCACCTTGGTCAAACAAATATCATCCTCCCTTGGAGGACGGGCTTCATCCATCTCCAGAATTAAGGGACCTTGAAATTGAAGCAAATGATGTCTTTGCAGTTTATCGTGACCAGTATTACGAGGGTGGCATTTCATCAGTATATGTGTGGGAAGACGAGAATGAAGGCTTTGTAGCTTGCTTCTTGATAAAGAAAGATGGCTCAAAGTCGGCACATGGTAGAAGAGGTTATCTGCAGGAGGGAGCTTGGGATGCTATACACGTTATCGAGGTGGGGCCCGAGGACGAAGGAATGGCCCATTATTGCTTGACAAGTACTGTGATGCTGTCACTGACAACAAATGATGATTCATCAGGCACGTTCAATTTGTCTGGATCAATTAGAAGACAGATGAGCATGGACCTGTCAGTAACAGAGGGTCATTTATGTAATATGGGGAGGATGATAGAGGAGTTGGAGGGCAAGCTGAGAAATTCACTAGAACAGGTTTATTTTGGGAAGACAAAAGAGATGGTTTGCACATTGCGACCGCCTTCTGAACTGGTGCAAATGAAGTTTCCGGATAGTCGAGACGTTTGA

Network for GWHGAAZE016164

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01115.18	F_actin_cap_B	1	239	3.00E-92

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10365	CAPZB	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0051016	biological_process	barbed-end actin filament capping
GO:0030036	biological_process	actin cytoskeleton organization
GO:0008290	cellular_component	F-actin capping protein complex
GO:0005737	cellular_component	cytoplasm
GO:0003779	molecular_function	actin binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	55.454
	SRR3591706	second leaf	62.002
	SRR3591707	mature leaf	97.523
	SRR3591708	Shoot apex	49.484
	SRR3591709	Stem	77.890
	SRR3591710	White floral bud	21.934
	SRR3591711	White flower	36.263
	SRR3591712	Green floral bud	18.450
	SRR3591713	Yellow flower	36.474
SRP173429	SRR8316895	Juvenile bud stage	16.787
	SRR8316896	Juvenile bud stage	26.850
	SRR8316897	Juvenile bud stage	11.585
	SRR8316894	Third green stage	9.084
	SRR8316900	Third green stage	16.187
	SRR8316901	Third green stage	16.012
	SRR8316898	Complete white stage	7.106
	SRR8316899	Complete white stage	29.892
	SRR8316903	Complete white stage	12.003
	SRR8316902	Silver flowering stage	6.529
	SRR8316904	Silver flowering stage	9.331
	SRR8316905	Silver flowering stage	3.599
	SRR8316906	Gold flowering stage	12.329
	SRR8316907	Gold flowering stage	14.645
	SRR8316908	Gold flowering stage	16.562
SRP132670	SRR6706286	Control	20.514
	SRR6706287	Light intensity 50%	21.339
	SRR6706288	Light intensity 20%	21.728
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.805
	CNS0095593	Slightly white alabastrum(diploid) 2	13.629
	CNS0095594	Slightly white alabastrum(diploid) 3	13.652
	CNS0095595	Whole white alabastrum(diploid) 2	8.740
	CNS0095596	Whole white alabastrum(diploid) 3	12.175
	CNS0095597	Whole white alabastrum(diploid) 4	9.072
	CNS0095598	Silvery flower (diploied) 1	16.269
	CNS0095599	Silvery flower (diploied) 2	15.161
	CNS0095600	Silvery flower (diploied) 3	13.148
	CNS0095601	Golden flower (diploid) 1	7.597
	CNS0095602	Golden flower (diploid) 2	14.909
	CNS0095603	Golden flower (diploid) 3	15.118
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.700
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.453
	CNS0095606	Slightly white alabastrum(tetraploid) 3	39.722
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.714
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.144
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.484
	CNS0095610	Silvery flower (tetraploid) 1	35.325
	CNS0095611	Silvery flower (tetraploid) 2	25.962
	CNS0095612	Silvery flower (tetraploid) 3	15.438
	CNS0095613	Golden flower (tetraploid) 1	18.946
	CNS0095614	Golden flower (tetraploid) 2	27.902
	CNS0095615	Golden flower (tetraploid) 3	7.690
CRA001975	CRR073297	Stem 1	20.356
	CRR073298	Stem 2	19.239
	CRR073299	Stem 3	15.670
	CRR073300	Leaf 1	14.378
	CRR073301	Leaf 2	12.620
	CRR073302	Leaf 3	14.853
	CRR073303	Juvenile bud 1	9.339
	CRR073304	Juvenile bud 2	9.689
	CRR073305	Juvenile bud 3	7.597
	CRR073306	Third green 1	3.154
	CRR073307	Third green 2	1.687
	CRR073308	Third green 3	3.293
	CRR073309	Second white 1	3.900
	CRR073310	Second white 2	1.725
	CRR073311	Second white 3	4.165
	CRR073312	Silver flowering 1	1.603
	CRR073313	Silver flowering 2	1.584
	CRR073314	Silver flowering 3	2.778
	CRR073315	Gold flowering 1	33.028
	CRR073316	Gold flowering 2	33.724
	CRR073317	Gold flowering 3	29.000
	CRR073318	Tawny withering 1	23.505
	CRR073319	Tawny withering 2	20.977
	CRR073320	Tawny withering 3	22.269