Gene detail

Detail information of GWHGAAZE016134

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010106863.1	60S ribosomal protein L3 [Morus notabilis]
Swissprot	tr\|P35684\|RL3_ORYSJ	60S ribosomal protein L3
trEMBL	tr\|W9S5Y9\|W9S5Y9_9ROSA	60S ribosomal protein L3 {ECO:0000313\|EMBL:EXC12323.1}
TAIR10	AT1G43170.9	ribosomal protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000004	gene	69923018	69927178	+
GWHAAZE00000004	mRNA	69923018	69927178	+
GWHAAZE00000004	exon	69923018	69923102	+
GWHAAZE00000004	exon	69923855	69923965	+
GWHAAZE00000004	exon	69924632	69924936	+
GWHAAZE00000004	exon	69925823	69926232	+
GWHAAZE00000004	exon	69926920	69927178	+
GWHAAZE00000004	CDS	69923018	69923102	+
GWHAAZE00000004	CDS	69923855	69923965	+
GWHAAZE00000004	CDS	69924632	69924936	+
GWHAAZE00000004	CDS	69925823	69926232	+
GWHAAZE00000004	CDS	69926920	69927178	+

Transcript Sequence
>GWHTAAZE016154 ATGTCTCATAGGAAGTTTGAGCATCCTAGGCATGGGTCCCTTGGATTTCTTCCAAGGAAGCGTGCTGCTCGCCACAGGGGAAAAGTGAAGGCTTTCCCTAAGGATGACCCTACCAAGCCGTGCAAGCTTACTGCTTTCTTGGGTTACAAGGCTGGGATGACCCATATTGTCCGTGAGGTCGAGAAACCAGGATCAAAGCTTCACAAGAAGGAGACATGTGAGGCTGTAACTATCATCGAGACTCCTCCAATGGTGGTTGTTGGAGTGGTGGCTTATGTAAAGACACCACGTGGCCTCCGTTCTCTGAACACTGTTTGGGCTCAGCATTTGAGTGAGGATGTGAAGAGAAGGTTCTACAAGAACTGGTGCAAGTCCAAGAAGAAGGCTTTCACTAAATACTCGAAAAAGTACGAGACTGATGATGGAAAGAAAGACATCCATACACAGCTAGAGAAAATGAAGAAGTATGCGACTGTTATTCGGGTTTTGGCTCATACCCAGATTAGGAAAATGAAGGGATTGAAGCAGAAGAAAGCACACTTGATGGAGATCCAGGTCAATGGTGGGACTATTGCTCAGAAGGTGGATTTTGCTTATGGATTCTTTGAGAAACAGGTTCCAGTGGATGCTGTTTTCCAAAAGGATGAGATGATTGACATCATTGGTGTGACCAAGGGTAAAGGTTACGAAGGTGTGGTCACTCGTTGGGGTGTGACCCGCCTTCCCCGTAAGACTCACAGAGGTTTGAGGAAGGTTGCTTGTATTGGTGCATGGCACCCTGCTCGTGTTTCCTTCACAGTTGCCAGGGCCGGTCAGAATGGATACCACCACAGAACTGAAATGAACAAGAAGGTTTATAAGCTTGGCAAGGCTGGGCTTGAATCCCACTCTGCCATCACAGAGTTTGACAGGACTGAGAAAGATATTACACCAATGGGTGGTTTCCCTCACTACGGGGTGGTGAAGGATGACTACTTGTTGATAAAGGGGTGCTGTGTGGGAACCAAGAAGAGGGTTGTTACCCTCCGCCAATCTCTGTTAGCACAGACATCACGTTTGGCCCTCGAGGAGATCAAGCTCAAGTTCATTGACACTTCCTCAAAATTCGGACATGGTCGCTTCCAGACTGTTGAAGAGAAGCAAAAGTTCTATGGACGCCTGAAGGCTTGA

Network for GWHGAAZE016134

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00297.23	Ribosomal_L3	1	370	1.70E-193

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02925	RP-L3e, RPL3	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	67.481
	SRR3591706	second leaf	37.499
	SRR3591707	mature leaf	10.382
	SRR3591708	Shoot apex	77.736
	SRR3591709	Stem	25.530
	SRR3591710	White floral bud	21.238
	SRR3591711	White flower	28.146
	SRR3591712	Green floral bud	65.823
	SRR3591713	Yellow flower	14.345
SRP173429	SRR8316895	Juvenile bud stage	59.738
	SRR8316896	Juvenile bud stage	102.435
	SRR8316897	Juvenile bud stage	50.676
	SRR8316894	Third green stage	35.300
	SRR8316900	Third green stage	77.905
	SRR8316901	Third green stage	79.267
	SRR8316898	Complete white stage	5.823
	SRR8316899	Complete white stage	39.904
	SRR8316903	Complete white stage	10.906
	SRR8316902	Silver flowering stage	5.417
	SRR8316904	Silver flowering stage	6.375
	SRR8316905	Silver flowering stage	2.390
	SRR8316906	Gold flowering stage	8.136
	SRR8316907	Gold flowering stage	7.682
	SRR8316908	Gold flowering stage	12.793
SRP132670	SRR6706286	Control	42.031
	SRR6706287	Light intensity 50%	45.250
	SRR6706288	Light intensity 20%	52.200
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	66.791
	CNS0095593	Slightly white alabastrum(diploid) 2	62.946
	CNS0095594	Slightly white alabastrum(diploid) 3	76.446
	CNS0095595	Whole white alabastrum(diploid) 2	45.491
	CNS0095596	Whole white alabastrum(diploid) 3	58.828
	CNS0095597	Whole white alabastrum(diploid) 4	31.523
	CNS0095598	Silvery flower (diploied) 1	18.755
	CNS0095599	Silvery flower (diploied) 2	15.369
	CNS0095600	Silvery flower (diploied) 3	11.705
	CNS0095601	Golden flower (diploid) 1	10.624
	CNS0095602	Golden flower (diploid) 2	10.342
	CNS0095603	Golden flower (diploid) 3	9.276
	CNS0095604	Slightly white alabastrum(tetraploid) 1	68.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	68.613
	CNS0095606	Slightly white alabastrum(tetraploid) 3	59.658
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.902
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.747
	CNS0095609	Whole white alabastrum(tetraploid) 3	57.481
	CNS0095610	Silvery flower (tetraploid) 1	14.082
	CNS0095611	Silvery flower (tetraploid) 2	10.518
	CNS0095612	Silvery flower (tetraploid) 3	7.831
	CNS0095613	Golden flower (tetraploid) 1	5.547
	CNS0095614	Golden flower (tetraploid) 2	8.782
	CNS0095615	Golden flower (tetraploid) 3	3.087
CRA001975	CRR073297	Stem 1	76.594
	CRR073298	Stem 2	71.746
	CRR073299	Stem 3	75.729
	CRR073300	Leaf 1	50.442
	CRR073301	Leaf 2	58.507
	CRR073302	Leaf 3	79.127
	CRR073303	Juvenile bud 1	46.083
	CRR073304	Juvenile bud 2	27.430
	CRR073305	Juvenile bud 3	40.730
	CRR073306	Third green 1	2.313
	CRR073307	Third green 2	4.168
	CRR073308	Third green 3	4.653
	CRR073309	Second white 1	4.067
	CRR073310	Second white 2	3.522
	CRR073311	Second white 3	1.498
	CRR073312	Silver flowering 1	2.148
	CRR073313	Silver flowering 2	3.364
	CRR073314	Silver flowering 3	1.986
	CRR073315	Gold flowering 1	17.632
	CRR073316	Gold flowering 2	20.395
	CRR073317	Gold flowering 3	14.134
	CRR073318	Tawny withering 1	57.763
	CRR073319	Tawny withering 2	37.824
	CRR073320	Tawny withering 3	61.933